Publications

Papers・Books/Book Chapters

Sekiguchi, Mitsuhiro; Horiuchi, Mafumi; Tozawa, Yuta; Shigemori, Hideyuki

(Japanese) Seven undescribed meroterpenoids from Sargassum siliquastrum and their inhibitory activity against amyloid β aggregation

Journal Of Natural Medicines (2024)

10.1007/s11418-024-01847-6

Takahashi, Kohei; Takeda, Riku; Savage, Thomas Kouyou; Kataoka, Masahito; Yamamoto, Tatsuya; Okabe, Satoshi; Nomura, Nobuhiko; Oshiki, Mamoru; Toyofuku, Masanori; TOKUNOU, Yoshihide

(Japanese) Membrane vesicles of Shewanella oneidensis MR-1 enhance denitrification growth in a species-specific manner

bioRxiv (2024)

10.1101/2025.02.19.636751

Son, Yongjun; Kim, Bitnara; Kim, Pureun; Min, Jihyeon; Park, Yerim; Yang, Jihye; Kim, Wonjae; Toyofuku, Masanori; Park, Woojun

(Japanese) Unexpected vulnerability of Enterococcus faecium to polymyxin B under anaerobic condition

Gut Microbes (2024)

10.1080/19490976.2024.2438465

Honma, Sota; Kimishima, Aoi; Kato, Satoshi; Horiuchi, Akari; Hokari, Rei; Honsho, Masako; Kojima, Hiroki; Tokiwa, Toshiyuki; Sugawara, Akihiro; Iwatsuki, Masato; Araki, Yasuko; Takahashi, Tadashi; Chinen, Takumi; Usui, Takeo; Ito, Kotaro; Asami, Yukihiro

(Japanese) The isolation of sclerotinin A as an anti-malarial compound by utilization of a global secondary metabolism regulator, laeA gene

Bioorganic Medicinal Chemistry Letters (2024)

10.1016/j.bmcl.2024.129947

Savage, Thomas Kouyou; Tsujimura, Seiya; Nomura, Nobuhiko; Toyofuku, Masanori; TOKUNOU, Yoshihide

(Japanese) Electrocatalysis of Bacterial Membrane Vesicles

Chemrxiv (2024)

10.26434/chemrxiv-2024-wr63b

Takeshita, Norio; Takashima, Yusuke; Degawa, Yousuke

(Japanese) Live imaging analysis of sexual and asexual reproduction, zygospore and sporangiospore formation, in Gilbertella persicaria

Mycoscience (2024)

10.47371/mycosci.2024.03.002

Urayama, Syun-ichi; Zhao, Yan-jie; Kuroki, Misa; Chiba, Yuto; Ninomiya, Akihiro; Hagiwara, Daisuke

(Japanese) Greetings from virologists to mycologists: A review outlining viruses that live in fungi

Mycoscience (2024)

10.47371/mycosci.2023.11.004

Kobayashi, Takuma; Nakajima-Kambe, Toshiaki

(Japanese) Isolation and characterization of a novel bacterium that promotes the degradation of poly(glycolic acid) by its extracellular esterase under thermophilic conditions

Polymer Degradation and Stability (2024)

10.1016/j.polymdegradstab.2024.111007

Buma, Seiji; Urayama, Syun-ichi; Suo, Rei; Itoi, Shiro; Okada, Shigeru; Ninomiya, Akihiro

(Japanese) Mycoviruses from Aspergillus fungi involved in fermentation of dried bonito

Virus Research (2024)

10.1016/j.virusres.2024.199470

Miyahara, Mikako; Doi, Yuki; Takaya, Naoki; Miyako, Eijiro

(Japanese) Photocatalytic scaffolds enhance anticancer performances of bacterial consortium AUN

Chemical Engineering Journal (2024)

10.1016/j.cej.2024.156378

Kadooka, Chihiro; Katsuki, Nozomi; Masuo, Shunsuke; Kojima, Saito; Amahisa, Madoka; Suzuki, Kouta; Doi, Yuki; Takeshita, Norio; Takaya, Naoki

(Japanese) Fungal glyceraldehyde 3-phosphate dehydrogenase GpdC maintains glycolytic mechanism against reactive nitrogen stress-induced damage

Frontiers in Microbiology (2024)

10.3389/fmicb.2024.1475567

Iwama, Sohei; Takano, Chikara; Nakashima, Kazunori; Aoyagi, Hideki; Kawasaki, Satoru

(Japanese) Arsenic Removal From Acid Mine Drainage Using Acid-Tolerant Bacteria

Clean-Soil Air Water (2024)

10.1002/clen.70000

Morigasaki, Susumu; Matsui, Motomu; Ohtsu, Iwao; Doi, Yuki; Kawano, Yusuke; Nakai, Ryosuke; Iwasaki, Wataru; Hayashi, Hisayoshi; Takaya, Naoki

(Japanese) Temporal and fertilizer-dependent dynamics of soil bacterial communities in buckwheat fields under long-term management

Scientific Reports (2024)

10.1038/s41598-024-60655-w

Tozawa, Yuta; Shinoda, Seiya; Sekiguchi, Mitsuhiro; Miyamae, Yusaku; Shigemori, Hideyuki

(Japanese) Effect of Meroterpenoids from Sargassum macrocarpum on the Inhibition of Amyloid Polypeptide Aggregation

Biological and Pharmaceutical Bulletin (2024)

10.1248/bpb.b24-00610

Nakai, Ryosuke; Kusada, Hiroyuki; Sassa, Fumihiro; Makino, Ayaka; Morigasaki, Susumu; Hayashi, Hisayoshi; Takaya, Naoki; Tamaki, Hideyuki

(Japanese) Roseiterribacter gracilis gen. nov., sp. nov., a novel filterable alphaproteobacterium isolated from soil using a gel-filled microwell array device

Plos One (2024)

10.1371/journal.pone.0304366

Kimishima, Aoi; Nishitomi, Atsuka; Kondo, Naozumi; Honma, Sota; Honsho, Masako; Negami, Sota; Maruyama, Serino; Taguchi, Kazuki; Matsui, Hidehito; Hanaki, Hideaki; Chinen, Takumi; Usui, Takeo; Ogasawara, Hideki; Asami, Yukihiro

(Japanese) Isolation of microorganisms from the feces of Kitasato Yakumo beef cattle as bioactive natural product producers

Bioscience, biotechnology, and biochemistry (2024)

10.1093/bbb/zbae103

Kimishima, Aoi; Nishitomi, Atsuka; Tsuruoka, Iori; Honsho, Masako; Negami, Sota; Honma, Sota; Sakai, Katsuyuki; Tokiwa, Toshiyuki; Kojima, Hiroki; Nonaka, Kenichi; Fuji, Shin-ichi; Chinen, Takumi; Usui, Takeo; Asami, Yukihiro

(Japanese) Synthesis and biological evaluation of burnettiene A derivatives enabling discovery of novel fungicide candidates

Journal of Pesticide Science (2024)

10.1584/jpestics.D24-014

Honma, Sota; Kimishima, Aoi; Kimishima, Atsushi; Honsho, Masako; Kojima, Hiroki; Tokiwa, Toshiyuki; Nishitomi, Atsuka; Kato, Satoshi; Kondo, Naozumi; Araki, Yasuko; Takahashi, Tadashi; Chinen, Takumi; Usui, Takeo; Fuji, Shin-ichi; Ito, Kotaro; Asami, Yukihiro

(Japanese) Re-discovery of MS-347a as a fungicide candidate through a new drug discovery platform with a multidrug-sensitive Saccharomyces cerevisiae screening system and the introduction of a global secondary metabolism regulator, laeA gene

Bioscience Biotechnology and Biochemistry (2024)

10.1093/bbb/zbae050

Masuo, Shunsuke

(Japanese) Microbial production of aromatic compounds and synthesis of high-performance bioplastics

Bioscience, Biotechnology, and Biochemistry (2024)

10.1093/bbb/zbae111

OKANE, Izumi; Kurita, Akiko; Ono, Yoshitaka

(Japanese) Is the Co-Occurrence of Neophysopella meliosmae-myrianthae and N. montana (Pucciniales) Common on Grapevines in Japan?

Journal of Fungi (2024)

10.3390/jof11030193

Toshiki, Nagakubo; Tatsuya, Nishiyama; Tatsuya, Yamamoto; Nobuhiko, Nomura; Masanori, Toyofuku

(Japanese) Contractile injection systems facilitate sporogenic differentiation of Streptomyces davawensis through the action of a phage tapemeasure protein-related effector

Nature Communications (2024)

10.1038/s41467-024-48834-9

Takano, Chikara; Nakashima, Kazunori; Kawasaki, Satoru; Aoyagi, Hideki

(Japanese) Utilisation of acid-tolerant bacteria for base metal recovery under strongly acidic conditions

Extremophiles (2024)

10.1007/s00792-024-01362-2

Nishino, Shunsuke; Oiki, Sayoko; Yamana, Yoshimasa; Hagiwara, Daisuke

(Japanese) Evaluation of antifungal activity of cerium oxide nanoparticles and associated cellular responses

Bioscience, Biotechnology, and Biochemistry (2024)

10.1093/bbb/zbae101

Okane, Izumi; Hsieh, Huei-Mei; Ju, Yu-Ming; Lin, Chun-Ru; Huang, Chun-Yun; Kuan, I-Ching

(Japanese) Xylaria iriomotensis sp. nov. from termite nests and notes on X. angulosa

Botanical Studies (2024)

10.1186/s40529-024-00447-7

Kong, Peifu; Zulfikar, Ainun; Thangunpai, Kotchaporn; Masuo, Shunsuke; Abe, Junichi P.; Enomae, Toshiharu

(Japanese) Efficient encapsulation of Hinoki essential oil with β-cyclodextrin using an ultrasound-aided coprecipitation technique for dual anti-Listeria monocytogenes and anti-Staphylococcus aureus activities

International Journal of Biological Macromolecules (2024)

10.1016/j.ijbiomac.2024.132382

de Castro, Patricia Alves; Akiyama, Daniel Yuri; Pinzan, Camila Figueiredo; dos Reis, Thaila Fernanda; Delbaje, Endrews; Rocha, Peter; Izidoro, Mario Augusto; Schenkman, Sergio; Sugimoto, Shinya; Takeshita, Norio; Steffen, Karin; Aycock, Jessica L.; Dolan, Stephen K.; Rokas, Antonis; Fill, Taicia; Goldman, Gustavo H.

(Japanese) Aspergillus fumigatus secondary metabolite pyripyropene is important for the dual biofilm formation with Pseudomonas aeruginosa

mBio (2024)

10.1128/mbio.00363-25

Kimishima, Aoi; Honma, Sota; Kimishima, Atsushi; Nishitomi, Atsuka; Honsho, Masako; Wasuwanich, Paul; Kojima, Hiroki; Tokiwa, Toshiyuki; Sugawara, Akihiro; Araki, Yasuko; Takahashi, Tadashi; Chinen, Takumi; Usui, Takeo; Fuji, Shin-ichi; Ito, Kotaro; Asami, Yukihiro

(Japanese) Synthesis and biological evaluation of MS-347a derivatives against plant pathogenic fungi based on a strategy of laeA gene introduction

Journal of Pesticide Science (2024)

10.1584/jpestics.D24-035

Kimishima, Aoi; Nishitomi, Atsuka; Tsuruoka, Iori; Sakai, Katsuyuki; Hokari, Rei; Honsho, Masako; Honma, Sota; Ono, Yuki; Kondo, Naozumi; Tsutsumi, Hayama; Kikuchi, Yuta; Tokiwa, Toshiyuki; Kojima, Hiroki; Higo, Mayuka; Nonaka, Kenichi; Inahashi, Yuki; Iwatsuki, Masato; Fuji, Shin-Ichi; Jang, Jun-Pil; Jang, Jae-Hyuk; Chinen, Takumi; Usui, Takeo; Asami, Yukihiro

(Japanese) Discovery of an anti-malarial compound, burnettiene A, with a multidrug-sensitive Saccharomyces cerevisiae screening system based on mitochondrial function inhibitory activity

Bioscience, Biotechnology, and Biochemistry (2024)

10.1093/bbb/zbae098

Kozawa, Takuma; Aoyagi, Hideki

(Japanese) Novel method for screening probiotic candidates tolerant to human gastrointestinal stress

Journal of Microbiological Methods (2024)

10.1016/j.mimet.2024.106945

Endo, Rin; Karasawa, Satoshi; Aoyagi, Hideki

(Japanese) Simultaneous removal of caesium and strontium using different removal mechanisms of probiotic bacteria

Scientific Reports (2024)

10.1038/s41598-024-57678-8

Nomura, Nobuhiko

(Japanese) Contractile injection systems facilitate sporogenic differentiation of Streptomyces davawensis through the action of a phage tapemeasure protein-related effector

Nat Commun (2024)

10.1038/s41467-024-48834-9

Mohsi, N F M; Apandi, A B; Hara, H; UTSUMI, Motoo

(Japanese) Biodegradation of Prazosin by Bacillus sp. Isolated from PPCPs Contaminated River in Malaysia

E3S Web of Conferences (2024)

10.1051/e3sconf/202453002001

Yamamoto, Riho; Miki, Hinata; Itani, Ayaka; Takeshita, Norio

(Japanese) Hyphae of the fungus Aspergillus nidulans demonstrate chemotropism to nutrients and pH

PLoS biology (2024)

10.1371/journal.pbio.3002726

Toshiki, Nagakubo; Tatsuya, Nishiyama; Tatsuya, Yamamoto; Nobuhiko, Nomura; Masanori, Toyofuku

(Japanese) Contractile injection systems facilitate sporogenic differentiation of Streptomyces davawensis through the action of a phage tapemeasure protein-related effector

Nature Communications (2024)

10.1038/s41467-024-48834-9

Miyazawa, Shinano; Sakai, Misa; Omae, Yuma; Ogawa, Yusuke; Shigemori, Hideyuki; Miyamae, Yusaku

(Japanese) Anti-inflammatory effect of covalent PPARγ; ligands that have a hybrid structure of GW9662 and a food-derived cinnamic acid derivative

Bioscience, Biotechnology, and Biochemistry (2024)

10.1093/bbb/zbae094

Uchiyama, Hiroki; Kudo, Toshifumi; Yamaguchi, Takehiro; Obana, Nozomu; Watanabe, Kenji; Abe, Kimihiro; Miyazaki, Hidetaka; Toyofuku, Masanori; Nomura, Nobuhiko; Akeda, Yukihiro; Nakao, Ryoma

(Japanese) Mucosal adjuvanticity and mucosal booster effect of colibactin-depleted probiotic Escherichia coli membrane vesicles

Hum Vaccin Immunother (2024)

10.1080/21645515.2024.2337987

Kawamoto, Hiroki; Watanabe, Miho; Mochimaru, Hanako; Nakahara, Nozomi; Meng, Xiang-Ying; Sakamoto, Sachiko; Morinaga, Kana; Katayama, Taiki; Yoshioka, Hideyoshi; 野村, 暢彦; Tamaki, Hideyuki

(Japanese) Atrimonas thermophila gen. nov., sp. nov., a novel anaerobic thermophilic bacterium of the phylum Atribacterota isolated from deep subsurface gas field and proposal of Atrimonadaceae fam. nov. within the class Atribacteria in the phylum Atribacterota

Syst Appl Microbiol (2024)

10.1016/j.syapm.2024.126515

Yoshiteru, Hashimoto; Kana, Ishigami; Azam, Hassaninasab; Katsuhiro, Kishi; Takuto, Kumano; Michihiko, Kobayashi

(Japanese) Curcumin degradation in a soil microorganism: Screening and characterization of a beta-diketone hydrolase

J. Biol. Chem. (2024)

10.1016/j.jbc.2024.107647

Sharad, Bhatnagar; AOYAGI, Hideki

(Japanese) Catalytic degradation of water micropollutants and LED-assisted decolourisation of Sudan dyes via mycosynthesised gold nanoparticles

International Journal of Environmental Science and Technology (2024)

10.1007/s13762-024-05794-3

Takahashi, Masato; Sawada, Yoshisuke; Aoyagi, Hideki

(Japanese) A forced aeration system for microbial culture of multiple shaken vessels suppresses volatilization

Archives of Microbiology (2024)

10.1007/s00203-024-03960-2

Tokunou, Yoshihide; Tongu, Hiromasa; Toyofuku, Masanori; Nomura, Nobuhiko

(Japanese) Variations in flavin redox states during extracellular electron transfer and electron conduction in Shewanella oneidensis

Electrochemistry Communications (2024)

10.1016/j.elecom.2024.107751

Syarifatul, Mufidah; Ahmed, Atito; Hideyuki, Shigemori; Yusaku, Miyamae

(Japanese) Decoration of GW9662 scaffold with a fragment hit via copper-catalyzed azide-alkyne cycloaddition reaction into peroxisome proliferator-activated receptor γ agonists

Tetrahedron Letters (2024)

10.1016/j.tetlet.2024.155226

Dong, Xiaochuan; Zhang, Sicheng; Chen, Xingyu; Lei, Zhongfang; Yuan, Tian; Shimizu, Kazuya; Utsumi, Motoo

(Japanese) Preliminary tests on carbon and nitrogen emissions and nutrients availability upon application of algal-bacterial granules to arid and low fertility soil

Chemical Engineering Journal (2024)

10.1016/j.cej.2024.152250

Zhao, Yankai; Li, Zejiao; Fan, Yunqiang; Santisouk, Lathdavong; Lei, Zhongfang; Yuan, Tian; Shimizu, Kazuya; Utsumi, Motoo

(Japanese) A preliminary test for nitrogen recovery potential of nitrogen fixing cyanobacteria and its granules treating wastewater containing different nitrogen species

Chemical Engineering Journal (2024)

10.1016/j.cej.2024.151765

Sa'diyah, Wasiatus; Zhao, Yan-Jie; Chiba, Yuto; Kondo, Hideki; Suzuki, Nobuhiro; Ban, Sayaka; Yaguchi, Takashi; URAYAMA, Shunichi; Hagiwara, Daisuke

(Japanese) New lineages of RNA viruses from clinical isolates of Rhizopus microsporus revealed by fragmented and primer-ligated dsRNA sequencing (FLDS) analysis.

mSphere (2024)

10.1128/msphere.00345-24

Uehara, S.| Takahashi, Y.| Iwakoshi, K.| Nishino, Y.| Wada, K.| Ono, A.| Hagiwara, D.| Chiba, T.| Yokoyama, K.| Sadamasu, K.

(Japanese) Isolation of azole-resistant Aspergillus spp. from food products

Medical Mycology (2024)

10.1093/mmy/myae026

Behrendt, L.| Alcolombri, U.| Hunter, J.E.| Smriga, S.| Mincer, T.| Lowenstein, D.P.| Yawata, Y.| Peaudecerf, F.J.| Fernandez, V.I.| Fredricks, H.F.| Almblad, H.| Harrison, J.J.| Stocker, R.| Van Mooy, B.A.S.

(Japanese) Microbial dietary preference and interactions affect the export of lipids to the deep ocean

Science (2024)

10.1126/science.aab2661

He, X.| Kusuya, Y.| Hagiwara, D.| Toyotome, T.| Arai, T.| Bian, C.| Nagayama, M.| Shibata, S.| Watanabe, A.| Takahashi, H.

(Japanese) Genomic diversity of the pathogenic fungus Aspergillus fumigatus in Japan reveals the complex genomic basis of azole resistance

Communications Biology (2024)

10.1038/s42003-024-05902-6

Salarinejad, S.| Seyfi, S.| Hayashi, S.| Moghimi, S.| Toolabi, M.| Taslimi, P.| Firoozpour, L.| Usui, T.| Foroumadi, A.

(Japanese) Design, synthesis, and biological evaluation of new biaryl derivatives of cycloalkyl diacetamide bearing chalcone moiety as type II c-MET kinase inhibitors

Molecular Diversity (2024)

10.1007/s11030-024-10807-x

Katsuki, N., Fukushima, R., Doi. Y., Masuo, S., Arakawa, T., Yamada, C., Fushinobu. S.*, and Takaya, N.*

(Japanese) Protocatechuate hydroxylase is a novel group A flavoprotein monooxygenase with a unique substrate recognition mechanism

Journal of Biological Chemistry (2024)

10.1016/j.jbc.2023.105508

Amahisa, M., Tsukagoshi, M., Kadooka, C., Masuo, S., Takeshita, N., Doi, Y., Takagi, H., Takaya, N.*

(Japanese) The Metabolic regulation of amino acid synthesis counteracts reactive nitrogen stress via Aspergillus nidulans cross-pathway control.

Journal of Fungi (2024)

10.3390/jof10010058

Nesma M. Samir, Jacob Locke-Gotel, Syun-Ichi Urayama, Adel A. El-Morsi, Ghada A. El-Sherbeny, Yongju Huang, Bruce D. L. Fitt, Hiromitsu Moriyama, Robert H. A. Coutts & Ioly Kotta-Loizou

(Japanese) Molecular characterization of a polymycovirus in Leptosphaeria biglobosa

Archives of Virology (2024)

10.1007/s00705-025-06253-1

Akihiro Ninomiya, Keisuke Masuda, Tsuyoshi Yamada, Misa Kuroki, Sayaka Ban, Takashi Yaguchi, Syun-ichi Urayama, and Daisuke Hagiwara

(Japanese) “Rediscovery of viomellein as an antibacterial compound and identification of its biosynthetic gene cluster in dermatophytes”

Applied and Environmental Microbiology (2024)

10.1128/aem.02431-24

Yachida, Masashi; Nakamura, Akira

(Japanese) Complete genome sequence of Luteolibacter sp. strain LG18, an L-glucose-utilizing bacterium isolated from soil

Microbiology resource announcements (2023)

10.1128/mra.00888-23

Kawashima, Kayuki; Nagakubo, Toshiki; Nomura, Nobuhiko; Toyofuku, Masanori

(Japanese) Iron Delivery through Membrane Vesicles in Corynebacterium glutamicum

Microbiology Spectrum (2023)

10.1128/spectrum.01222-23

Katsuki, Nozomi; Masuo, Shunsuke; Nukui, Noriyuki; Minakawa, Hajime; Takaya, Naoki

(Japanese) Gallic acid fermentation by metabolically engineered Escherichia coli producing p-hydroxybenzoate hydroxylase from Hylemonella gracilis NS1

The Journal of general and applied microbiology (2023)

10.2323/jgam.2023.08.004

Kita, Kyosuke; Yoshida, Sanako; Masuo, Shunsuke; Nakamura, Akira; Ishikawa, Shu; Yoshida, Ken-Ichi

(Japanese) Genes encoding a novel thermostable bacteriocin in the thermophilic bacterium Aeribacillus pallidus PI8

Journal of Applied Microbiology (2023)

10.1093/jambio/lxad293

Yamazaki, Izumi; Onuma, Moe; Ri, Tomohiko; Okane, Izumi; Kanzaki, Natsumi; Degawa, Yousuke; Sawamura, Kyoichi

(Japanese) Laboratory experiments of Stigmatomyces majewskii (Laboulbeniales: Laboulbeniaceae) infection on Drosophila suzukii (Diptera: Drosophilidae)

Applied Entomology and Zoology (2023)

10.1007/s13355-023-00843-8

Nagakubo, Toshiki; Asamizu, Shumpei; Yamamoto, Tatsuya; Kato, Manami; Nishiyama, Tatsuya; Toyofuku, Masanori; Nomura, Nobuhiko; Onaka, Hiroyasu

(Japanese) Intracellular Phage Tail-Like Nanostructures Affect Susceptibility of Streptomyces lividans to Osmotic Stress

Msphere (2023)

10.1128/msphere.00114-23

Uehara, Satomi; Takahashi, Yumi; Iwakoshi, Keiko; Nishino, Yukari; Wada, Kotono; Ono, Asuka; Hagiwara, Daisuke; Chiba, Takashi; Yokoyama, Keiko; Sadamasu, Kenji

(Japanese) Isolation of azole-resistant Aspergillus spp. from food products

Medical mycology (2023)

10.1093/mmy/myae026

Komaba, Kyoka; TOYOFUKU, Masanori; NOMURA, Nobuhiko; GOTO, Hiromasa

(Japanese) Treatment of DNA and Virus with Volcanic Water

FUTURUM-Tsukuba Science Journal(2023)

10.15068/0002007361

Ikemoto, J. Mitsushi; Aihara, Yukine; Ishii, Noriyuki; Shigemori, Hideyuki

(Japanese) 3,4-Dihydroxybenzalacetone inhibits the propagation of hydrogen peroxide-induced oxidative effect via secretory components from SH-SY5Y cells

Biological & Pharmaceutical Bulletin (2023)

10.1248/bpb.b22-00727

Ji, Jing Xin; Okane, Izumi; Zhang, Yun Feng; Fan, Yong Shan; Xu, Ke; Li, Zhuang; Li, Yu; Kakishima, Makoto

(Japanese) Phylogeny and taxonomy of three species of Blastospora (Pucciniales) from East Asia

Mycologia (2023)

10.1080/00275514.2023.2196501

Katsuki, Nozomi; Fukushima, Riku; Doi, Yuki; Masuo, Shunsuke; Arakawa, Takatoshi; Yamada, Chihaya; Fushinobu, Shinya; Takaya, Naoki

(Japanese) Protocatechuate hydroxylase is a novel group A flavoprotein monooxygenase with a unique substrate recognition mechanism

The Journal of biological chemistry (2023)

10.1016/j.jbc.2023.105508

He, Xiaohui; Kusuya, Yoko; Hagiwara, Daisuke; Toyotome, Takahito; Arai, Teppei; Bian, Cai; Nagayama, Masaki; Shibata, Saho; Watanabe, Akira; Takahashi, Hiroki

(Japanese) Genomic diversity of the pathogenic fungus Aspergillus fumigatus in Japan reveals the complex genomic basis of azole resistance

Communications biology (2023)

10.1038/s42003-024-05902-6

Amahisa, Madoka; Tsukagoshi, Madoka; Kadooka, Chihiro; Masuo, Shunsuke; Takeshita, Norio; Doi, Yuki; Takagi, Hiroshi; Takaya, Naoki; Amillis, Sotiris

(Japanese) The Metabolic Regulation of Amino Acid Synthesis Counteracts Reactive Nitrogen Stress via Aspergillus nidulans Cross-Pathway Control

Journal of Fungi (2023)

10.3390/jof10010058

Takahashi, Kohei; Li, Xiaojie; Kunoh, Tatsuki; Nagasawa, Ryo; Takeshita, Norio; Utada, Andrew S

(Japanese) Novel Insights into Microbial Behavior Gleaned Using Microfluidics

Microbes and Environments (2023)

10.1264/jsme2.ME22089

Liu, Tianxiao; Kurogo, Narumi; Kodato, Miwa; Fujimoto, Naoshi; Itayama, Tomoaki; Okano, Kunihiro; Utsumi, Motoo; Zhang, Zhenya; Lei, Zhongfang; Yuan, Tian; Maseda,Hideaki; Sugiura, Norio; Shimizu, Kazuya

(Japanese) MlrA, an Essential Enzyme for Microcystins and Nodularin on First Step Biodegradation in Microcystin-Degrading Bacteria.

Chemical Research in Toxicology (2023)

10.1021/acs.chemrestox.3c00341

Salarinejad, Somayeh; Seyfi, Soheila; Hayashi, Seiko; Moghimi, Setareh; Toolabi, Mahsa; Taslimi, Parham; Firoozpour, Loghman; Usui, Takeo; Foroumadi, Alireza

(Japanese) Design, synthesis, and biological evaluation of new biaryl derivatives of cycloalkyl diacetamide bearing chalcone moiety as type II c-MET kinase inhibitors

Molecular diversity (2023)

10.1007/s11030-024-10807-x

Urayama, Syun-ichi; Zhao, Yan-jie; Kuroki, Misa; Chiba, Yuto; Ninomiya, Akihiro; Hagiwara, Daisuke

(Japanese) Greetings from viorologists to fungi researchers: A review outlining viruses that live in fungi

Mycoscience (2023)

10.47371/mycosci.2023.11.004

Takeshita, N.| Sato, H.

(Japanese) Live imaging of momentary sporangiospore extrusion from trichospores and its morphological changes in Zancudomyces culisetae (Harpellales)

Fungal Ecology (2023)

10.1016/j.funeco.2023.101262

Takeshita, N.| Oda, K.

(Japanese) Japanese traditional fermentation uses solid-state fungal cultivation to produce sake

Microbial Fermentations in Nature and as Designed Processes (2023)

10.1002/9781119850007.ch9

Yachida, Masashi; Nakamura, Akira

(Japanese) Complete Genome Sequence of Luteolibacter sp. Strain LG18, an L-Glucose Utilizing Bacterium Isolated from Soil.

Microbiology Resource Announcements (2023)

10.1128/mra.00888-23

Kawaguchi, Hideo; Masuo, Shunsuke; Wakai, Keiko; Takaya, Naoki; Hasunma, Tomohisa; Kaneko, Tatsuo; Okada, Satoshi; Sazuka, Takashi; Ogino, Chiaki; Kondo, Akihiko

(Japanese) Metabolic engineering for 4-aminophenylalanine production from lignocellulosic biomass by recombinant Escherichia coli.

RSC Sustain. (2023)

10.1039/D3SU00053B

Kanda, Yusuke; Mukaiyama, Minagi; Yamasaki, Yohei; Usui, Takeo; Nagumo, Yoko

(Japanese) Capsaicin indirectly regulates TRPA1 via the arachidonic acid cascade, resulting in TJ opening

Bioscience Biotechnology And Biochemistry (2023)

10.1093/bbb/zbad145

Takahashi, Michiko; Masuda, Yuichi; Chiba, Yuto; Urayama, Shunichi; Nagasaki, Keizo

(Japanese) DsRNA sequencing revealed a previously missed terminal sequence of a+ ssRNA virus that infects dinoflagellate Heterocapsa circularisquama

Virus Genes (2023)

10.1007/s11262-023-02046-3

Tsutsui, Kyoko; Masuya, Hayato; Hiemo, Ayaka; Kageyama, Koji; Okane, Izumi

(Japanese) Japanese white oak seedlings killed by Phytophthora castaneae: a potential source of chestnut trunk rot

Journal of General Plant Pathology (2023)

10.1007/s10327-023-01165-x

Bamba, Kenzo; Takabe, Kyosuke; Daitoku, Hiroaki; Tanaka, Yoshikazu; Ohtani, Azusa; Ozawa, Midori; Fukamizu, Akiyoshi; Nomura, Nobuhiko; Kohara, Arihiro; Kunoh,Tatsuki

(Japanese) Discrimination of mycoplasma infection using machine learning models trained on autofluorescence signatures of host cells

Sensors & Diagnostics (2023)

10.1039/d3sd00175j

Kimishima, Aoi; Hagimoto, Daichi; Honsho, Masako; Sakai, Katsuyuki; Honma, Sota; Fuji, Shin-Ichi; Iwatsuki, Masato; Tokiwa, Toshiyuki; Nonaka, Kenichi; Chinen, Takumi;Usui, Takeo; Asami, Yukihiro

(Japanese) Total Synthesis of Fusaramin, Enabling Stereochemical Elucidation, Structure-Activity Relationship, and Uncovering the Hidden Antimicrobial Activity against Plant PathogenicFungi

Organic Letters (2023)

10.1021/acs.orglett.3c03792

Mukaiyama, Minagi; Uchiyama, Chihiro; Fukuda, Akane; Nakazawa, Yoshiki; Kuramochi, Yuka; Shibata, Yudai; Konno, Sho; Muguruma, Kyohei; Matsugaki, Naohiro; Asari,Tomo; Ogawa, Kazuyoshi; Taguchi, Akihiro; Takayama, Kentaro; Taniguchi, Atsuhiko; Nagumo, Yoko; Senda, Toshiya; Hayashi, Yoshio; Usui, Takeo

(Japanese) X-Ray Conformation and Structure-Activity Relationships of MA026, a Reversible Tight Junction Opener

Journal of Medicinal Chemistry (2023)

10.1021/acs.jmedchem.3c00365

Shinoda, S.| Tozawa, Y.| Kurimoto, S.-I.| Shigemori, H.| Sekiguchi, M.

(Japanese) Three new meroterpenoids from Sargassum macrocarpum and their inhibitory activity against amyloid β aggregation

Journal of Natural Medicines (2023)

10.1007/s11418-023-01693-y

Kumano, T.

(Japanese) Specialized metabolites degradation by microorganisms

Bioscience, Biotechnology, and Biochemistry (2023)

10.1093/bbb/zbad184

Toshiki, Nagakubo; Shumpei, Asamizu; Tatsuya, Nishiyama; Tatsuya, Yamamoto; Masanori, Toyofuku; Nobuhiko, Nomura; Hiroyasu, Onaka

(Japanese) Intracellular Phage Tail-Like Nanostructures Affect Susceptibility of Streptomyces lividans to Osmotic Stress.

mSphere (2023)

10.1128/msphere.00114-23

Umehara, Yoshihiro; Aoyagi, Hideki

(Japanese) Development of a simple cultured cell-anaerobic microbial co-culture system using liquid paraffin

Journal Of Bioscience and Bioengineering (2023) (2023)

10.1016/j.jbiosc.2023.03.008

Takahashi, Masato; Kato, Takuya; Aoyagi, Hideki

(Japanese) Development of a feed-forward control system for medium in shake-flask culture

Biochemical Engineering Journal (2023)

10.1016/j.bej.2023.108939

Misa, Kuroki; Yaguchi, Takashi; Urayama, syunichi; Hagiwara, Daisuke

(Japanese) Experimental verification of strain-dependent relationship between mycovirus and its fungal host

Iscience (2023)

10.1016/j.isci.2023.107337

Tokunou, Yoshihide; Tongu, Hiromasa; Kogure, Yugo; Okamoto, Akihiro; Toyofuku, Masanori; Nomura, Nobuhiko

(Japanese) Colony-Based Electrochemistry Reveals Electron Conduction Mechanisms Mediated by Cytochromes and Flavins in Shewanella oneidensis

Environmental Science & Technology (2023)

10.1021/acs.est.4c00007

Kunoh, Tatsuki; Yamamoto, Tatsuya; Ono, Erika; Sugimoto, Shinya; Takabe, Kyosuke; Takeda, Minoru; Utada, Andrew Shinichi; Nomura, Nobuhiko

(Japanese) Identification of lthB , a Gene Encoding a Putative Glycosyltransferase Family 8 Protein Required for Leptothrix Sheath Formation

Applied and Environmental Microbiology (2023)

10.1128/aem.01919-22

Kento Miyazawa, Yoshihito Ohmura, Izumi Okane

(Japanese) Gyalectidium setiferum (Gomphillaceae, Ascomycota), a foliicolous lichen, new to East Asia and its molecular phylogenetic position

Taiwania (2023)

10.6165/tai.2023.68.101

Kento Miyazawa, Yoshihito Ohmura, Yuichi, Yamaoka, Izumi Okane

(Japanese) Materials for the Distribution of Lichens in Japan (25) Coenogonium isidiatum (Coenogoniaceae, Ascomycota)

The Journal of Japanese Botany (2023)

10.51033/jjapbot.ID0102

Kunoh, T.| Ono, E.| Yamamoto, T.| Suzuki, I.| Takeda, M.| Nomura, N.

(Japanese) Development of a Gene Replacement Method for the Filamentous Bacterium Leptothrix cholodnii SP-6

Bio-protocol (2023)

10.21769/BioProtoc.4652

Itani A, Masuo S, Yamamoto R, Serizawa T, Fukasawa Y, Takaya N, Toyota M, Betsuyaku S, Takeshita N.

(Japanese) Local calcium signal transmission in mycelial network exhibits decentralized stress responses.

PNAS Nexus (2023)

10.1093/pnasnexus/pgad012.

Toyofuku, M.| Schild, S.| Kaparakis-Liaskos, M.| Eberl, L.

(Japanese) Composition and functions of bacterial membrane vesicles

nature reviews microbiology (2023)

10.1038/s41579-023-00875-5

Obana, N.| Takada, H.| Crowe-Mcauliffe, C.| Iwamoto, M.| Egorov, A.A.| Wu, K.J.Y.| Chiba, S.| Murina, V.| Paternoga, H.| Tresco, B.I.C.| Nomura, N.| Myers, A.G.| Atkinson,G.C.| Wilson, D.N.| Hauryliuk, V.

(Japanese) Genome-encoded ABCF factors implicated in intrinsic antibiotic resistance in Gram-positive bacteria: VmlR2, Ard1 and CplR

Nucleic Acids Research (2023)

10.1093/nar/gkad193

Hassan, Sidra; Urayama, Shunichi; Shabeer, Saba; Wu, Chien-Fu; Moriyama, Hiromitsu; Coutts, Robert H. A.; Kotta-Loizou, Ioly; Jamal, Atif

(Japanese) Molecular and biological characterization of a partitivirus from Paecilomyces variotii

Journal of General Virology (2023)

10.1099/jgv.0.001925

Hassan, Sidra; Urayama, Shunichi; Shabeer, Saba; Kiran, Tahseen Ali; Wu, Chien-Fu; Moriyama, Hiromitsu; Coutts, Robert H.A.; Loizou, Ioly Kotta; Jamal, Atif

(Japanese) Molecular and biological characterization of a novel partitivirus from Talaromyces pinophilus

Virus Research (2023)

10.1016/j.virusres.2024.199351

Kong, Peifu; Abe, Junichi Peter; Masuo, Shunsuke; Enomae, Toshiharu

(Japanese) Preparation and characterization of tea tree oil-β-cyclodextrin microcapsules with super-high encapsulation efficiency

Journal of Bioresources And Bioproducts (2023)

10.1016/j.jobab.2023.03.004

Nagumo, Yoko; Villareal, Myra O; Isoda, Hiroko; Usui, Takeo

(Japanese) RSK4 confers paclitaxel resistance to ovarian cancer cells, which is resensitized by its inhibitor BI-D1870

Biochemical and Biophysical Research Communications (2023)

10.1016/j.bbrc.2023.08.060

Kong, Peifu; Thangunpai, Kotchaporn; Zulfikar, Ainun; Masuo, Shunsuke; Abe, Junichi Peter; Enomae, Toshiharu

(Japanese) Preparation of Green Anti-Staphylococcus aureus Inclusion Complexes Containing Hinoki Essential Oil

Foods (2023)

10.3390/foods12163104

Lenini, Cecilia; Rodriguez Ayala, Facundo; Goni, Anibal Juan; Rateni, Liliana; Nakamura, Akira; Grau, Roberto Ricardo

(Japanese) Probiotic properties of Bacillus subtilis DG101 isolated from the traditional Japanese fermented food natto

Frontiers in Microbiology (2023)

10.3389/fmicb.2023.1253480

Nguyen, Viet Tru; Sakata, Nanami; Takako, Ishiga; Giyu, Usuki; Yoshiteru, Hashimoto; Ishiga, Yasuhiro

(Japanese) Vt35 antitoxin plays a central regulatory role in virulence of Pseudomonas savastanoi pv. glycinea on soybean

Journal of General Plant Pathology (2023)

10.1007/s10327-023-01124-6

Lenini, Cecilia; Rodriguez Ayala, Facundo; Goni, Anibal Juan; Rateni, Liliana; Nakamura, Akira; Grau, Roberto Ricardo

(Japanese) Probiotic properties of Bacillus subtilis DG101 isolated from the traditional Japanese fermented food natto

Frontiers in Microbiology (2023)

10.3389/fmicb.2023.1253480

Cham T. M. Le, Hideo Ishii, Izumi Okane, Yuichi Yamaoka

(Japanese) Sequence analysis of cytochrome b gene in Vietnamese isolates of Hemileia vastatrix, the causal agent of coffee leaf rust, in relation to potential QoI fungicide resistance

Tropical Plant Pathology (2023)

10.1007/s40858-023-00556-x

Ayano Ohmaki, Izumi Okane, Pedro W. Crous, Gerard J. M. Verkley

(Japanese) Cylindromonium dirinariae sp. nov. (Ascomycota, Hypocreales), a new nectrioid lichenicolous species on Dirinaria applanata in Japan

Fungal Systematics and Evolution (2023)

10.3114/fuse.2023.11.01

Le, C.T.M.| Ishii, H.| Okane, I.| Yamaoka, Y.

(Japanese) Sequence analysis of cytochrome b gene in Vietnamese isolates of Hemileia vastatrix, the causal agent of coffee leaf rust, in relation to potential QoI fungicide resistance

Tropical Plant Pathology (2023)

10.1007/s40858-023-00556-x

Heredia-Ponce, Z.| Secchi, E.| Toyofuku, M.| Marinova, G.| Savorana, G.| Eberl, L.

(Japanese) Genotoxic stress stimulates eDNA release via explosive cell lysis and thereby promotes streamer formation of Burkholderia cenocepacia H111 cultured in a microfluidicdevice

npj biofilms and microbiomes (2023)

10.1038/s41522-023-00464-7

Kim, W.| Park, Y.| Jung, J.| Jeon, C.O.| Toyofuku, M.| Lee, J.| Park, W.

(Japanese) Biological and Chemical Approaches for Controlling Harmful Microcystis Blooms

Journal of Microbiology (2023)

10.1007/s12275-024-00115-2

Takahashi, K.| Oshiki, M.| Ruan, C.| Morinaga, K.| Toyofuku, M.| Nomura, N.| Johnson, D.R.

(Japanese) Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations

Environmental Microbiology Reports (2023)

10.1111/1758-2229.13221

Yan, Y.| Huang, X.| Zhou, Y.| Li, J.| Liu, F.| Li, X.| Hu, X.| Wang, J.| Guo, L.| Liu, R.| Takaya, N.| Zhou, S.

(Japanese) Cytosol Peroxiredoxin and Cell Surface Catalase Differentially Respond to H2O2 Stress in Aspergillus nidulans

Antioxidants (2023)

10.3390/antiox12071333

Zhang, C.| Hao, L.| Miao, H.| Chen, J.| Yuan, T.| Lei, Z.| Zhang, Z.| Utsumi, M.| Itayama, T.| Miura, T.| Ihara, I.| Maseda, H.| Tabassum, S.| Shimizu, K.

(Japanese) Emergence of multidrug-resistant Acinetobacter baumannii under fluctuating levofloxacin concentration and its control by chlorine and UV disinfection

Process Safety and Environmental Protection (2023)

10.1016/j.psep.2023.03.010

Kakizaki T, Abe H, Kotouge Y, Matsubuchi M, Sugou M, Honma C, Tsukuta K, Satoh S, Shioya T, Nakamura H, Cannon KS, Woods BL, Gladfelter A, Takeshita N, MuraguchiH.

(Japanese) Live-cell imaging of septins and cell polarity proteins in the growing dikaryotic vegetative hypha of the model mushroom Coprinopsis cinerea.

Scientific Reports (2023)

10.1038/s41598-023-37115-y

Zhang, J.| Shen, Q.| Miao, H.| Li, Q.| Shimada, M.| Yuan, T.| Utsumi, M.| Lei, Z.| Zhang, Z.| Takanashi, H.| Fujimoto, N.| Ichise, S.| Asada, Y.| Nishimura, O.| Akiba, M.|Shimizu, K.

(Japanese) Development of a Quantification and Detection Method for 2-MIB-producing Cyanobacteria

Turkish Journal of Fisheries & Aquatic Sciences (2023)

10.4194/TRJFAS21811

Urayama, Shunichi; Fukudome, Akihito; Hirai, Miho; Okumura, Tomoyo; Nishimura, Yosuke; Takaki, Yoshihiro; Kurosawa, Norio; Koonin, Eugene V.; Krupovic, Mart;Nunoura, Takuro

(Japanese) Double-stranded RNA sequencing reveals distinct riboviruses associated with thermoacidophilic bacteria from hot springs in Japan

Nature Microbiology (2023)

10.1038/s41564-023-01579-5

Anand, Ajeeta; Aoyagi, Hideki

(Japanese) Understudied Hyperphosphatemia (Chronic Kidney Disease) Treatment Targets and New Biological Approaches

Medicina-Lithuania (2023)

10.3390/medicina59050959

Jian, Pu; Kumano, Takuto; Kimura, Mio; Kurisaki, Makoto; Hashimoto, Yoshiteru; Kobayashi, Michihiko

(Japanese) Biodegradation of the methylenedioxyphenyl group in piperine and its derivatives: discovery of a novel methylenetransferase in an actinomycete

Applied and Environmental Microbiology (2023)

10.1128/aem.01145-23

Zhao, Yan-jie; Hosoya, Tsuyoshi; Urayama, Shunichi; Hagiwara, Daisuke

(Japanese) Seven new mycoviruses identified from isolated ascomycetous macrofungi

Virus Research (2023)

10.1016/j.virusres.2023.199290

Aida, Honoka; Uchida, Keisuke; Nagai, Motoki; Hashizume, Takamasa; Masuo, Shunsuke; Takaya, Naoki; Ying, Bei-Wen

(Japanese) Machine learning-assisted medium optimization revealed the discriminated strategies for improved production of the foreign and native metabolites

Computational and structural biotechnology journal (2023)

10.1016/j.csbj.2023.04.020

Tanaka, Taisei; Fukushima, Hirono; Betkekar, Vipul V.; Ohmori, Ken; Suzuki, Keisuke; Miyamae, Yusaku; Shigemori, Hideyuki

(Japanese) Effects of degree of polymerization of B-type procyanidins on amyloid aggregation

Heterocycles (2023)

10.3987/COM-23-14888

Utsugi, Yuki; Nishimura, Ken; Yamanaka, Satoshi; Nishino, Kohei; Kosako, Hidetaka; Sawasaki, Tatsuya; Shigemori, Hideyuki; Wandless, Thomas J; Miyamae, Yusaku

(Japanese) Ubiquitin-Derived Fragment as a Peptide Linker for the Efficient Cleavage of a Target Protein from a Degron

Acs Chemical Biology (2023)

10.1021/acschembio.3c00670

Koroyasu, Yusuke; Nguyen, Thanh-Vinh; Sasaguri, Shun; Marzo, Asier; Ezcurdia, Iñigo; Nagata, Yuuya; Yamamoto, Tatsuya; Nomura, Nobuhiko; Hoshi, Takayuki; Ochiai,Yoichi; Fushimi, Tatsuki

(Japanese) Microfluidic platform using focused ultrasound passing through hydrophobic meshes with jump availability

PNAS Nexus (2023)

10.1093/pnasnexus/pgad207

Prasad, M.; Obana, N.; Lin, S.-Z.; S., Zhao; Sakai, K.; Blanch-Mercader, C.; Prost, J.; Nomura, N.; Rupprecht, J.-F.; Fattaccioli, J.; Utada, Andrew Shinichi

(Japanese) Alcanivorax borkumensis Biofilms Enhance Oil Degradation By Interfacial Tubulation

Science (2023)

10.1126/science.adf3345

Bhatnagar, S.| Aoyagi, H.

(Japanese) Catalytic degradation of water micropollutants and LED-assisted decolourisation of Sudan dyes via mycosynthesised gold nanoparticles

International Journal of Environmental Science and Technology (2023)

10.1007/s13762-024-05794-3

2020


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Shinozaki, Y.| Kitamoto, H.| Sameshima-Yamashita, Y.| Kinoshita, A.| Nakajima-Kambe, T.

Isolation of a novel Co2+-resistant bacterium and the application of its siderophore in Co2+ recovery from an aqueous solution

Journal of General and Applied Microbiology(2019)

(Japanese) DOI

https://doi.org/10.2323/jgam.2018.12.001 

Morinaga, K.| Yoshida, K.| Takahashi, K.| Nomura, N.| Toyofuku, M.

Peculiarities of biofilm formation by Paracoccus denitrificans

Applied Microbiology and Biotechnology(2020)

Carrara, F.| Brumley, D.R.| Hein, A.M.| Yawata, Y.| Salek, M.M.| Lee, K.S.| Sliwerska, E.| Levin, S.A.| Stocker, R.

Generating Controlled, Dynamic Chemical Landscapes to Study Microbial Behavior

Journal of visualized experiments : JoVE(2020)

Jiang, G.| Takase, M.| Aihara, Y.| Shigemori, H.

Inhibitory activities of kukoamines A and B from Lycii Cortex on amyloid aggregation related to Alzheimer’s disease and type 2 diabetes

Journal of Natural Medicines(2020)

(Japanese) IOS

Nagakubo, T.| Nomura, N.| Toyofuku, M.

Cracking Open Bacterial Membrane Vesicles

Frontiers in Microbiology(2020)

Ono, Y.| Ohmachi, K.| Unartngam, J.| Okane, I.| Ayawong, C.| Janruang, P.

Milesina thailandica, a second rust fungus on an early diverged leptosporangiate fern genus, Lygodium, found in Thailand

Mycological Progress(2020)

Myint, K.T.| Otsuka, M.| Okubo, A.| Mitsuhashi, R.| Oguro, A.| Maeda, H.| Shigeno, T.| Sato, K.| Nakajima-Kambe, T.

Isolation and identification of flower yeasts for the development of mixed culture to produce single-cell protein from waste milk

Bioresource Technology Reports (2020)

Furuichi, Y.| Yoshimoto, S.| Inaba, T.| Nomura, N.| Hori, K.

Process Description of an Unconventional Biofilm Formation by Bacterial Cells Autoagglutinating through Sticky, Long, and Peritrichate Nanofibers

Environmental Science and Technology(2020)

Masuo, S.| Tsuda, Y.| Namai, T.| Minakawa, H.| Shigemoto, R.| Takaya, N.

Enzymatic Cascade in Pseudomonas that Produces Pyrazine from α-Amino Acids

ChemBioChem(2020)

Suzuki, M.| Koubara, K.| Takenoya, M.| Fukano, K.| Ito, S.| Sasaki, Y.| Nakamura, A.| Yajima, S.

Single amino acid mutation altered substrate specificity for L-glucose and inositol in scyllo-inositol dehydrogenase isolated from Paracoccus laeviglucosivorans

Bioscience, Biotechnology and Biochemistry(2020)

Kanazawa, H.| Ozaki, S.| Doi, Y.| Masuo, S.| Takaya, N.

Symbiotic riboflavin degradation by Microbacterium and Nocardioides bacteria

Bioscience, Biotechnology and Biochemistry(2020)

Urayama, S.-I.| Takaki, Y.| Hagiwara, D.| Nunoura, T.

DsRNA-seq reveals novel RNA virus and virus-like putative complete genome sequences from hymeniacidon sp. Sponge

Microbes and Environments(2020)

Fukasawa, F.| Hirai, M.| Takaki, Y.| Shimane, Y.| Thomas, C.E.| Urayama, S.-I.| Nunoura, T.| Koyama, S.

A new polycipivirus identified in Colobopsis shohki

Archives of Virology(2020)

Ugai, T.| Minami, A.| Tanaka, S.| Ozaki, T.| Liu, C.| Shigemori, H.| Hashimoto, M.| Oikawa, H.

Biosynthetic Machinery of 6-Hydroxymellein Derivatives Leading to Cyclohelminthols and Palmaenones

ChemBioChem(2020)

Mukaiyama, M.| Yamasaki, Y.| Usui, T.| Nagumo, Y.

Transient receptor potential V4 channel stimulation induces reversible epithelial cell permeability in MDCK cell monolayers

FEBS Letters(2019)

Kinoshita, N.| Sugita, A.| Lustig, B.| Betsuyaku, S.| Fujikawa, T.| Morishita, T.

Automating measurements of fluorescent signals in freely moving plant leaf specimens

Plant Biotechnology(2019)

Anand, A.| Aoyagi, H.

A High Throughput Isolation Method for Phosphate-Accumulating Organisms

Scientific Reports(2019)

Miyamoto, T.| Masuya, H.| Koizumi, A.| Yamaguchi, T.| Ishihara, M.| Yamaoka, Y.| Okane, I.| Shizuki, M.| Ohara, M.

A report of dieback and mortality of elm trees suspected of Dutch elm disease in Hokkaido, Japan

Journal of Forest Research(2019)

Tanaka, N.| Hatano, T.| Saito, S.| Wakabayashi, Y.| Abe, T.| Kawano, Y.| Ohtsu, I.

Generation of hydrogen sulfide from sulfur assimilation in Escherichia coli

Journal of General and Applied Microbiology(2019)

Bundit, A.| Yamada, K.| Shigemori, H.| Laosripaiboon, W.| Datta, A.| Pornprom, T.

Potential of trans-p-coumaric acid released from Rottboellia cochinchinensis for weed control in vegetable fields

Allelopathy Journal(2019)

Fujita, T.| Shiota, K.| Yoshikawa, J.| Ogawa, S.| Aoyagi, H.

Simple method for analyzing the purity of protease-containing samples by acid-treatment SDS-PAGE

Journal of Bioscience and Bioengineering(2019)

Yawata, Y.| Kiyokawa, T.| Kawamura, Y.| Hirayama, T.| Takabe, K.| Nomura, N.

Intraand interspecies variability of single-cell innate fluorescence signature of microbial cell

Applied and Environmental Microbiology(2019)

Kobayashi, K.| Aoyagi, H.

Microbial community structure analysis in Acer palmatum bark and isolation of novel bacteria IAD-21 of the candidate division FBP

PeerJ(2019)

Shigemori, H.

Bioactive Compounds Involved in the Life Cycle of Higher Plants

Progress in the chemistry of organic natural products(2019)

Takenoya, M.| Shimamur, T.| Yamanaka, R.| Adachi, Y.| Ito, S.| Sasaki, Y.| Nakamura, A.| Yajima, S.

Structural basis for the substrate recognition of aminoglycoside 7′′-phosphotransferase-Ia from Streptomyces hygroscopicus

Acta Crystallographica Section F: Structural Biology Communications(2019)

Kawano, Y.| Shiroyama, M.| Kanazawa, K.| Suzuki, Y.A.| Ohtsu, I.

Development of high-throughput quantitative analytical method for l-cysteine-containing dipeptides by LC–MS/MS toward its fermentative production

AMB Express(2019)

Kunoh, T.| Morinaga, K.| Sugimoto, S.| Miyazaki, S.| Toyofuku, M.| Iwasaki, K.| Nomura, N.| Utada, A.S.

Polyfunctional Nanofibril Appendages Mediate Attachment, Filamentation, and Filament Adaptability in Leptothrix cholodnii

ACS Nano(2019)

Ishida, T.| Hasebe, A.| Zhao, X.| Shigemori, H.

Biological activity of sinapic acid derivatives isolated from raphanus sativus

Heterocycles(2019)

Inoue, T.| Okane, I.| Ishiga, Y.| Degawa, Y.| Hosoya, T.| Yamaoka, Y.

The life cycle of Hymenoscyphus fraxineus on Manchurian ash, Fraxinus mandshurica, in Japan

Mycoscience(2019)

Betsuyaku, S.| Nomura, N.| Fukuda, H.

A Versatile Method for Mounting Arabidopsis Leaves for Intravital Time-lapse Imaging

Journal of visualized experiments : JoVE(2019)

Minakawa, H.| Masuo, S.| Kaneko, T.| Takaya, N.

Fermentation and purification of microbial monomer 4-amminocinnamic acid to produce ultra-high performance bioplastics

Process Biochemistry(2019)

Yang, Y.| Zhou, Y.| Li, J.| Yu, H.| Takaya, N.| Wang, P.| Zhou, S.

Novel peroxiredoxin-based sensor for sensitive detection of hydrogen peroxide

Biochemical and Biophysical Research Communications(2019)

Hamada, K.| Naito, A.| Hamaguchi, Y.| Kanesaki, Y.| Kasahara, K.| Taguchi, A.| Omura, N.| Hayashi, Y.| Usui, T.

Ubr1p-Cup9p-Ptr2p pathway involves in the sensitivity to readthrough compounds negamycin derivatives in budding yeast

Bioscience, Biotechnology and Biochemistry(2019)

Prasad, M.| Obana, N.| Sakai, K.| Nagakubo, T.| Miyazaki, S.| Toyofuku, M.| Fattaccioli, J.| Nomura, N.| Utada, A.S.

Point mutations lead to increased levels of c-di-GMP and phenotypic changes to the colony biofilm morphology in alcanivorax borkumensis SK2

Microbes and Environments(2019)

Hayakawa, I.| Shioda, S.| Chinen, T.| Usui, T.| Kigoshi, H.

Structure-activity relationship study of gatastatin based on the TOPLISS tree approach

Heterocycles(2019)

Betsuyaku, S.

The Rise of Evolutionary Molecular Plant-Microbe Interactions (EvoMPMI)

Plant and Cell Physiology(2019)

Gao, X.| Schmid, M.| Zhang, Y.| Fukuda, S.| Takeshita, N.| Fischer, R.

The spindle pole body of Aspergillus nidulans is asymmetrical and contains changing numbers of γ-tubulin complexes

Journal of Cell Science(2019)

Xia, Y.| Peplowski, L.| Cheng, Z.| Wang, T.| Liu, Z.| Cui, W.| Kobayashi, M.| Zhou, Z.

Metallochaperone function of the self-subunit swapping chaperone involved in the maturation of subunit-fused cobalt-type nitrile hydratase

Biotechnology and Bioengineering(2019)

Nakajima, T.| Kawano, Y.| Ohtsu, I.| Maruyuama-Nakashita, A.| Allahham, A.| Sato, M.| Sawada, Y.| Hirai, M.Y.| Yokoyama, T.| Ohkama-Ohtsu, N.

Effects of Thiosulfate as a Sulfur Source on Plant Growth, Metabolites Accumulation and Gene Expression in Arabidopsis and Rice

Plant and Cell Physiology(2019)

Sun, J.| Jiang, G.| Shigemori, H.

Inhibitory Activity on Amyloid Aggregation of Rosmarinic Acid and Its Substructures from Isodon japonicus

Natural Product Communications(2019)

Shimada, T.L.| Betsuyaku, S.| Inada, N.| Ebine, K.| Fujimoto, M.| Uemura, T.| Takano, Y.| Fukuda, H.| Nakano, A.| Ueda, T.

Enrichment of Phosphatidylinositol 4,5-Bisphosphate in the Extra-Invasive Hyphal Membrane Promotes Colletotrichum Infection of Arabidopsis thaliana

Plant and Cell Physiology(2019)

Anand, A.| Sato, M.| Aoyagi, H.

Screening of phosphate-accumulating probiotics for potential use in Chronic kidney disorder

Food Science and Technology Research(2019)

Hao, L.| Okano, K.| Zhang, C.| Zhang, Z.| Lei, Z.| Feng, C.| Utsumi, M.| Ihara, I.| Maseda, H.| Shimizu, K.

Effects of levofloxacin exposure on sequencing batch reactor (SBR) behavior and microbial community changes

Science of the Total Environment(2019)

Abe, T.| Kobayashi, K.| Kawamura, S.| Sakaguchi, T.| Shiiba, K.| Kobayashi, M.

Dipeptide synthesis by internal adenylation domains of a multidomain enzyme involved in nonribosomal peptide synthesis

Journal of General and Applied Microbiology(2019)

Yasuda, M.| Takeshita, N.| Shigeto, S.

Inhomogeneous Molecular Distributions and Cytochrome Types and Redox States in Fungal Cells Revealed by Raman Hyperspectral Imaging Using Multivariate Curve Resolution-Alternating Least Squares

Analytical Chemistry(2019)

Fernandez, V.I.| Yawata, Y.| Stocker, R.

A Foraging Mandala for Aquatic Microorganisms

ISME Journal(2019)

Gao, Y.| Shimizu, K.| Amano, C.| Wang, X.| Pham, T.L.| Sugiura, N.| Utsumi, M.

Response of microcystin biosynthesis and its biosynthesis gene cluster transcription in Microcystis aeruginosa on electrochemical oxidation

Environmental Technology (United Kingdom)(2019)

Yamabe, K.| Nomura, N.| Goto, H.

Biological quorum sensing molecule-metal complex produces π-conjugated polymer

International Journal of Polymeric Materials and Polymeric Biomaterials(2019)

Toyofuku, M.

Bacterial communication through membrane vesicles

Bioscience, Biotechnology and Biochemistry(2019)

Zhao, C.| Zhang, N.| Zheng, H.| Zhu, Q.| Utsumi, M.| Yang, Y.

Effective and long-term continuous bio-hydrogen production by optimizing fixed-bed material in the bioreactor

Process Biochemistry(2019)

Osibe, D.A.| Aoyagi, H.

A novel strategy for the synthesis of gold nanoparticles with Catharanthus roseus cell suspension culture

Materials Letters(2019)

Yuan, T.| Cheng, Y.| Wang, X.| Yu, Y.| Zhang, Z.| Lei, Z.| Shimizu, K.| Utsumi, M.| Adachi, Y.| Lee, D.-J.

A novel anaerobic digestion system coupling biogas recirculation with MgCl2 addition for multipurpose sewage sludge treatment

Journal of Cleaner Production(2019)

Kawaguchi, H.| Miyagawa, H.| Nakamura-Tsuruta, S.| Takaya, N.| Ogino, C.| Kondo, A.

Enhanced Phenyllactic Acid Production in Escherichia coli Via Oxygen Limitation and Shikimate Pathway Gene Expression

Biotechnology Journal(2019)

Anand, A.| Aoyagi, H.

Estimation of microbial phosphate-accumulation abilities

Scientific Reports(2019)

Ahmad, J.S.M.| Zhao, Z.| Zhang, Z.| Shimizu, K.| Utsumi, M.| Lei, Z.| Lee, D.-J.| Tay, J.H.

Algal-bacterial aerobic granule based continuous-flow reactor with effluent recirculation instead of air bubbling: Stability and energy consumption analysis

Bioresource Technology Reports(2019)

Ahmad, A.| Tsutsui, A.| Iijima, S.| Suzuki, T.| Shah, A.A.| Nakajima-Kambe, T.

Gene structure and comparative study of two different plastic-degrading esterases from Roseateles depolymerans strain TB-87

Polymer Degradation and Stability(2019)

Bhatnagar, S.| Kobori, T.| Ganesh, D.| Ogawa, K.| Aoyagi, H.

Biosynthesis of silver nanoparticles mediated by extracellular pigment from talaromyces purpurogenus and their biomedical applications

Nanomaterials(2019)

Tanaka, N.| Kawano, Y.| Satoh, Y.| Dairi, T.| Ohtsu, I.

Gram-scale fermentative production of ergothioneine driven by overproduction of cysteine in Escherichia coli

Scientific Reports(2019)

Paul, S.| Stamnes, M.| Thomas, G.H.| Liu, H.| Hagiwara, D.| Gomi, K.| Filler, S.G.| Moye-Rowley, W.S.

AtrR is an essential determinant of azole resistance in aspergillus fumigatus

mBio(2019)

Niiyama, A.| Murata, K.| Shigemori, Y.| Zebda, A.| Tsujimura, S.

High-performance enzymatic biofuel cell based on flexible carbon cloth modified with MgO-templated porous carbon

Journal of Power Sources(2019)

Andreoni, F.| Toyofuku, M.| Menzi, C.| Kalawong, R.| Shambat, S.M.| François, P.| Zinkernagel, A.S.| Eberl, L.

Antibiotics stimulate formation of vesicles in staphylococcus aureus in both phage-dependent and -independent fashions and via different routes

Antimicrobial Agents and Chemotherapy(2019)

2019


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Nagakubo, T., Kumano, T., Ohta, T., Hashimoto, Y. & Kobayashi, M.

Copper amine oxidases catalyze the oxidative deamination and hydrolysis of cyclic imines

Nature Communications (2019)

Hara, E., Yoshimoto, T., Shigeno, T., Mayumi, D., Suzuki, T., Mitsuhashi, K., Abe, A., Nakajima-Kambe, T.

Ecological impact evaluation by constructing in situ microcosm with porous ceramic arrowhead

Chemosphere(2019).

Toyofuku, M., Nomura, N., Eberl, L.

Types and origins of bacterial membrane vesicles

Nature Reviews Microbiology(2019).

Takusagawa, S., Satoh, Y., Ohtsu, I., Dairi, T.

Ergothioneine production with Aspergillus oryzae

Bioscience, Biotechnology and Biochemistry(2019).

Fujimori, S., Abe, J.P., Okane, I., Yamaoka, Y.

Three new species in the genus Tulasnella isolated from orchid mycorrhiza of Spiranthes sinensis var. amoena (Orchidaceae)

Mycoscience(2019).

2018


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Imakura, A., Inoue, Y., Sakurai, T., Futamura, Y.

Parallel Implementation of the Nonlinear Semi-NMF Based Alternating Optimization Method for Deep Neural Networks

Neural Processing Letters(2018).

Osibe, D.A., Chiejina, N.V., Ogawa, K., Aoyagi, H.

Stable antibacterial silver nanoparticles produced with seed-derived callus extract of Catharanthus roseus

Artificial Cells, Nanomedicine and Biotechnology(2018).

Kawasaki, Y., Aniruddha, N., Minakawa, H., Masuo, S., Kaneko, T., Takaya, N.

Novel polycondensed biopolyamide generated from biomass-derived 4-aminohydrocinnamic acid

Applied Microbiology and Biotechnology(2018).

Cheng, Z., Peplowski, L., Cui, W., Xia, Y., Liu, Z., Zhang, J., Kobayashi, M., Zhou, Z.

Identification of key residues modulating the stereoselectivity of nitrile hydratase toward rac-mandelonitrile by semi-rational engineering

Biotechnology and Bioengineering(2018).

Gao, Y., Shimizu, K., Amano, C., Wang, X., Pham, T.L., Sugiura, N., Utsumi, M.

Response of microcystin biosynthesis and its biosynthesis gene cluster transcription in Microcystis aeruginosa on electrochemical oxidation

Environmental Technology (United Kingdom)(2018).

Nonaka, L., Yamamoto, T., Maruyama, F., Hirose, Y., Onishi, Y., Kobayashi, T., Suzuki, S., Nomura, N., Masuda, M., Yano, H.

Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate

PLoS ONE(2018).

Arai, R., Imakura, A., Sakurai, T.

An improvement of the nonlinear semi-NMF based method by considering bias vectors and regularization for deep neural networks

International Journal of Machine Learning and Computing(2018).

Iwase, S., Futamura, Y., Imakura, A., Sakurai, T., Tsukamoto, S., Ono, T.

Contour integral method for obtaining the self-energy matrices of electrodes in electron transport calculations

Physical Review B(2018).

Suzuki, H., Hirose, D., Yamaoka, Y.

Species composition and distribution of Coleosporium species on the needles of Pinus densiflora at a semi-natural vegetation succession site in central Japan

Mycoscience(2018).

Betsuyaku, S., Katou, S., Takebayashi, Y., Sakakibara, H., Nomura, N., Fukuda, H.

Salicylic Acid and Jasmonic Acid Pathways are Activated in Spatially Different Domains Around the Infection Site During Effector-Triggered Immunity in Arabidopsis thaliana

Plant & cell physiology(2018).

Okane, I., Ono, Y.

Phylogenetic study of indigenous grapevine leaf rust fungi in North America and biological identity of an invasive grapevine leaf rust fungus in Brazil

Mycoscience(2018).

Takahashi-Nakaguchi, A., Sakai, K., Takahashi, H., Hagiwara, D., Toyotome, T., Chibana, H., Watanabe, A., Yaguchi, T., Yamaguchi, M., Kamei, K., Gonoi, T.

Aspergillus fumigatus adhesion factors in dormant conidia revealed through comparative phenotypic and transcriptomic analyses

Cellular Microbiology(2018).

Cheng, Z., Cui, W., Xia, Y., Peplowski, L., Kobayashi, M., Zhou, Z.

Modulation of Nitrile Hydratase Regioselectivity towards Dinitriles by Tailoring the Substrate Binding Pocket Residues

ChemCatChem(2018).

Imakura, A., Sakurai, T.

Block SS-CAA: A complex moment-based parallel nonlinear eigensolver using the block communication-avoiding Arnoldi procedure

Parallel Computing(2018).

Masuo, S., Komatsuzaki, A., Takeshita, N., Itoh, E., Takaaki, O., Zhou, S., Takaya, N.

Spatial heterogeneity of glycogen and its metabolizing enzymes in Aspergillus nidulans hyphal tip cells

Fungal Genetics and Biology

Nishida, H., Tanaka, S., Handa, Y., Ito, M., Sakamoto, Y., Matsunaga, S., Betsuyaku, S., Miura, K., Soyano, T., Kawaguchi, M., Suzaki, T.

A NIN-LIKE PROTEIN mediates nitrate-induced control of root nodule symbiosis in Lotus japonicus

Nature Communications(2018).

Yoshida, M., Mochizuki, T., Urayama, S.-I., Yoshida-Takashima, Y., Nishi, S., Hirai, M., Nomaki, H., Takaki, Y., Nunoura, T., Takai, K.

Quantitative viral community DNA analysis reveals the dominance of single-stranded DNA viruses in offshore upper bathyal sediment from Tohoku, Japan

Frontiers in Microbiology(2018).

Aihara, M., Urayama, S.-I., Le, M.T., Katoh, Y., Higashiura, T., Fukuhara, T., Arie, T., Teraoka, T., Komatsu, K., Moriyama, H.

Infection by Magnaporthe oryzae chrysovirus 1 strain A triggers reduced virulence and pathogenic race conversion of its host fungus, Magnaporthe oryzae

Journal of General Plant Pathology(2018).

Takeshita, N.

Oscillatory fungal cell growth

Fungal Genetics and Biology(2018).

Imakura, A., Futamura, Y., Sakurai, T.

Structure-preserving technique in the block SS-Hankel method for solving hermitian generalized eigenvalue problems

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)(2018).

Okada, R., Ichinose, S., Takeshita, K., Urayama, S.-I., Fukuhara, T., Komatsu, K., Arie, T., Ishihara, A., Egusa, M., Kodama, M., Moriyama, H.

Molecular characterization of a novel mycovirus in Alternaria alternata manifesting two-sided effects: Down-regulation of host growth and up-regulation of host plant pathogenicity

Virology(2018).

Ishiga, T., Ishiga, Y., Betsuyaku, S., Nomura, N.

AlgU contributes to the virulence of Pseudomonas syringae pv. tomato DC3000 by regulating production of the phytotoxin coronatine

Journal of General Plant Pathology(2018).

Aarthy, M., Puhazhselvan, P., Aparna, R., George, A.S., Gowthaman, M.K., Ayyadurai, N., Masaki, K., Nakajima-Kambe, T., Kamini, N.R.

Growth associated degradation of aliphatic-aromatic copolyesters by Cryptococcus sp. MTCC 5455

Polymer Degradation and Stability(2018).

Takahashi, M., Aoyagi, H.

Practices of shake-flask culture and advances in monitoring CO2 and O2

Applied Microbiology and Biotechnology(2018).

Xia, Y., Yu, H., Zhou, Z., Takaya, N., Zhou, S., Wang, P.

Peroxiredoxin system of Aspergillus nidulans resists inactivation by high concentration of hydrogen peroxide-mediated oxidative stress

Journal of Microbiology and Biotechnology(2018).

Nagakubo, T., Kumano, T., Hashimoto, Y., Kobayashi, M.

Hemoglobin catalyzes CoA degradation and thiol addition to flavonoids

Scientific Reports(2018).

Endo, R., Aoyagi, H.

Adsorption preference for divalent metal ions by Lactobacillus casei JCM1134

Applied Microbiology and Biotechnology(2018).

Takahashi, F., Suzuki, T., Osakabe, Y., Betsuyaku, S., Kondo, Y., Dohmae, N., Fukuda, H., Yamaguchi-Shinozaki, K., Shinozaki, K.

A small peptide modulates stomatal control via abscisic acid in long-distance signaling

Nature(2018).

Yuan, T., Cheng, Y., Huang, W., Zhang, Z., Lei, Z., Shimizu, K., Utsumi, M.

Fertilizer potential of liquid product from hydrothermal treatment of swine manure

Waste Management(2018).

Tsunoda, T., Takase, M., Shigemori, H.

Structure-activity relationship of clovamide and its related compounds for the inhibition of amyloid β aggregation

Bioorganic and Medicinal Chemistry(2018).

Riquelme, M., Aguirre, J., Bartnicki-Garcia, S., Braus, G.H., Feldbrugge, M., Fleig, U., Hansberg, W., Herrera-Estrell, A., Kamper, J., Kuck, U., Mourino-Perez, R.R., Takeshita, N., Fischer, R.

Fungal morphogenesis, from the polarized growth of hyphae to complex reproduction and infection structures

Microbiology and Molecular Biology Reviews(2018).

Takahashi, M., Aoyagi, H.

Monitoring of CO2and O2concentrations in the headspace of Sakaguchi flasks during liquid culture of microorganism

Applied Microbiology and Biotechnology(2018).

Kanazawa, H., Shigemoto, R., Kawasaki, Y., Oinuma, K.-I., Nakamura, A., Masuo, S., Takaya, N.

Two-component flavin-dependent riboflavin monooxygenase degrades riboflavin in Devosia riboflavina

Journal of Bacteriology(2018).

Nakaguchi, A.T., Hagiwara, D., Takahashi, H., Sakai, K., Toyotome, T., Watanabe, A., Kamei, K., Gonoi, T.

Investigation of virulence factors by “omics” approaches

Medical Mycology Journal(2018).

Fukano, K., Ozawa, K., Kokubu, M., Shimizu, T., Ito, S., Sasaki, Y., Nakamura, A., Yajima, S.

Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification

PLoS ONE(2018).

Xia, Y., Cui, W., Cheng, Z., Peplowski, L., Liu, Z., Kobayashi, M., Zhou, Z.

Improving the Thermostability and Catalytic Efficiency of the Subunit-Fused Nitrile Hydratase by Semi-Rational Engineering

ChemCatChem(2018).

Osawa, R., Kamide, T., Satoh, Y., Kawano, Y., Ohtsu, I., Dairi, T.

Heterologous and High Production of Ergothioneine in Escherichia coli

Journal of Agricultural and Food Chemistry(2018).

Zhou, L., Evangelinos, M., Wernet, V., Eckert, A.F., Ishitsuka, Y., Fischer, R., Nienhaus, G.U., Takeshita, N.

Superresolution and pulse-chase imaging reveal the role of vesicle transport in polar growth of fungal cells

Science Advances(2018).

Toyofuku, M., Yoon, S.-S.

Nitric Oxide, an Old Molecule With Noble Functions in Pseudomonas aeruginosa Biology

Advances in Microbial Physiology(2018).

Pham, T.-L., Utsumi, M.

An overview of the accumulation of microcystins in aquatic ecosystems

Journal of Environmental Management(2018).

Seta, K., Suzuki, T., Kiyoshi, K., Shigeno, T., Nakajima-Kambe, T.

Potential use of methane fermentation digested slurry as a low-cost, environmentally-friendly nutrient for bioethanol production from crude glycerol by Klebsiella variicola TB-83D

New Biotechnology(2018).

Takahashi, M., Aoyagi, H.

Effect of intermittent opening of breathable culture plugs and aeration of headspace on the structure of microbial communities in shake-flask culture

Journal of Bioscience and Bioengineering(2018).

Ye, X., Sakurai, T.

Spectral clustering with adaptive similarity measure in Kernel space

Intelligent Data Analysis(2018).

Yamada, H., Imakura, A., Imamura, T., Sakurai, T.

Optimization of reordering procedures in HOTRG for distributed parallel computing

Proceedings - 2018 IEEE 32nd International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2018(2018).

Oinuma, K.-I., Yamaguchi, I., Shindo, D., Fujimoto, M., Nishiyama, T., Takano, H., Takaya, N., Ueda, K.

Extracytoplasmic diaphorase activity of Streptomyces coelicolor A3(2)

Biochemical and Biophysical Research Communications(2018).

Kurusu, T., Mitsuka, D., Yagi, C., Kitahata, N., Tsutsui, T., Ueda, T., Yamamoto, Y., Negi, J., Iba, K., Betsuyaku, S., Kuchitsu, K.

Involvement of S-type anion channels in disease resistance against an oomycete pathogen in Arabidopsis seedlings

Communicative and Integrative Biology(2018).

Shigemoto, R., Oinuma, K.-I., Masuo, S., Takaya, N.

Novel antioxidant isolated from warcupiella spinulosa jcm 2358, 7-hydroxycordylactam

Heterocycles(2018).

Morinaga, K., Yamamoto, T., Nomura, N., Toyofuku, M.

Paracoccus denitrificans can utilize various long-chain N-acyl homoserine lactones and sequester them in membrane vesicles

Environmental Microbiology Reports(2018).

Kawano, Y., Suzuki, K., Ohtsu, I.

Current understanding of sulfur assimilation metabolism to biosynthesize l-cysteine and recent progress of its fermentative overproduction in microorganisms

Applied Microbiology and Biotechnology(2018).

Zhao, Z., Yang, X., Cai, W., Lei, Z., Shimizu, K., Zhang, Z., Utsumi, M., Lee, D.-J.

Response of algal-bacterial granular system to low carbon wastewater: Focus on granular stability, nutrients removal and accumulation

Bioresource Technology(2018).

Toyotome, T., Hagiwara, D., Takahashi, H., Watanabe, A., Kamei, K.

Emerging Antifungal Drug Resistance in Aspergillus fumigatus and Among Other Species of Aspergillus

Current Fungal Infection Reports(2018).

Hossain, M.Z., Ishiga, Y., Yamanaka, N., Ogiso-Tanaka, E., Yamaoka, Y.

Soybean leaves transcriptomic data dissects the phenylpropanoid pathway genes as a defence response against Phakopsora pachyrhizi

Plant Physiology and Biochemistry(2018).

Urayama, S.-I., Takaki, Y., Nishi, S., Yoshida-Takashima, Y., Deguchi, S., Takai, K., Nunoura, T.

Unveiling the RNA virosphere associated with marine microorganisms

Molecular Ecology Resources(2018).

Minakawa, H., Masuo, S., Kaneko, T., Takaya, N.

Fermentation and purification of microbial monomer 4-amminocinnamic acid to produce ultra-high performance bioplastics

Process Biochemistry(2018).

Moriyama, H., Urayama, S.-I., Higashiura, T., Le, T.M., Komatsu, K.

Chrysoviruses in magnaporthe oryzae

Viruses(2018).

Ye, X., Sakurai, T.

Unsupervised feature selection for microarray gene expression data based on discriminative structure learning

Journal of Universal Computer Science(2018).

Sakai, K., Matsuzaki, F., Wise, L., Sakai, Y., Jindou, S., Ichinose, H., Takaya, N., Kato, M., Wariishi, H., Shimizu, M.

Biochemical characterization of CYP505D6, a self-sufficient cytochrome P450 from the white-rot fungus Phanerochaete chrysosporium

Applied and Environmental Microbiology(2018).

Onoue, T., Tanaka, Y., Hagiwara, D., Ekino, K., Watanabe, A., Ohta, K., Kamei, K., Shibata, N., Goto, M., Oka, T.

Identification of Two Mannosyltransferases Contributing to Biosynthesis of the Fungal-type Galactomannan α-Core-Mannan Structure in Aspergillus fumigatus

Scientific Reports(2018).

Fernandez, V.I., Yawata, Y., Stocker, R.

A Foraging Mandala for Aquatic Microorganisms

ISME Journal(2018).

Shigemoto, R., Matsumoto, T., Masuo, S., Takaya, N.

5-Methylmellein is a novel inhibitor of fungal sirtuin and modulates fungal secondary metabolite production

The Journal of general and applied microbiology(2018).

Toyotome, T., Hagiwara, D., Watanabe, A., Kamei, K.

A simple method to detect the tandem repeat of the cyp51A promoter in azole-resistant strains of Aspergillus fumigatus

Medical mycology(2018).

Kinoshita, N., Betsuyaku, S.

The effects of lepidopteran oral secretion on plant wounds: A case study on the interaction between spodoptera litura and arabidopsis Thaliana

Plant Biotechnology(2018).

Matsuda, M., Morikuni, K., Sakurai, T.

Spectral feature scaling method for supervised dimensionality reduction

IJCAI International Joint Conference on Artificial Intelligence(2018).

Kawashima, D., Hosoya, T., Tomoda, H., Kita, M., Shigemori, H.

Sydowianumols A, B, and C, three new compounds from discomycete poculum pseudosydowianum

Chemical and Pharmaceutical Bulletin(2018).

Yamabe, K., Nomura, N., Goto, H.

Biological quorum sensing molecule-metal complex produces π-conjugated polymer

International Journal of Polymeric Materials and Polymeric Biomaterials(2018).

Betsuyaku, S., Katou, S., Takebayashi, Y., Sakakibara, H., Nomura, N., Fukuda, H.

Erratum: Salicylic Acid and Jasmonic Acid Pathways are Activated in Spatially Different Domains Around the Infection Site During Effector-Triggered Immunity in Arabidopsis thaliana (Plant & cell physiology)

Plant & cell physiology(2018).

Du, L., Imakura, A., Sakurai, T.

Simultaneous band reduction of two symmetric matrices

Computers and Mathematics with Applications(2018).

de Assis, L.J., Manfiolli, A., Mattos, E., Fabri, J.H.T.M., Malavazi, I., Jacobsen, I.D., Brock, M., Cramer, R.A., Thammahong, A., Hagiwara, D., Ries, L.N.A., Goldman, G.H.

Protein kinase a and high-osmolarity glycerol response pathways cooperatively control cell wall carbohydrate mobilization in aspergillus fumigatus

mBio(2018).

Nakanishi, Y., Yamamoto, T., Obana, N., Toyofuku, M., Nomura, N., Kaneko, A.

Spatial Distribution and Chemical Tolerance of Streptococcus mutans within Dual-Species Cariogenic Biofilms

Microbes and environments(2018).

Urayama, S.-I., Takaki, Y., Nunoura, T., Miyamoto, N.

Complete Genome Sequence of a Novel RNA Virus Identified from a Deep-Sea Animal, Osedax japonicus

Microbes and environments(2018).

Kobayashi, S., Hira, D., Yoshida, K., Toyofuku, M., Shida, Y., Ogasawara, W., Yamaguchi, T., Araki, N., Oshiki, M.

Nitric Oxide Production from Nitrite Reduction and Hydroxylamine Oxidation by Copper-containing Dissimilatory Nitrite Reductase (NirK) from the Aerobic Ammonia-oxidizing Archaeon, Nitrososphaera viennensis

Microbes and environments(2018).

Xia, Y., Peplowski, L., Cheng, Z., Wang, T., Liu, Z., Cui, W., Kobayashi, M., Zhou, Z.

Metallochaperone function of the self-subunit swapping chaperone involved in the maturation of subunit-fused cobalt-type nitrile hydratase

Biotechnology and Bioengineering(2018).