研究活動

原著論文

2019年

Ecological impact evaluation by constructing in situ microcosm with porous ceramic arrowhead

Authors

Hara, E., Yoshimoto, T., Shigeno, T., Mayumi, D., Suzuki, T., Mitsuhashi, K., Abe, A., Nakajima-Kambe, T.

Journal

Chemosphere(2019).

Types and origins of bacterial membrane vesicles

Authors

Toyofuku, M., Nomura, N., Eberl, L.

Journal

Nature Reviews Microbiology(2019).

Ergothioneine production with Aspergillus oryzae

Authors

Takusagawa, S., Satoh, Y., Ohtsu, I., Dairi, T.

Journal

Bioscience, Biotechnology and Biochemistry(2019).

Three new species in the genus Tulasnella isolated from orchid mycorrhiza of Spiranthes sinensis var. amoena (Orchidaceae)

Authors

Fujimori, S., Abe, J.P., Okane, I., Yamaoka, Y.

Journal

Mycoscience(2019).

2018年

Parallel Implementation of the Nonlinear Semi-NMF Based Alternating Optimization Method for Deep Neural Networks

Authors

Imakura, A., Inoue, Y., Sakurai, T., Futamura, Y.

Journal

Neural Processing Letters(2018).

Stable antibacterial silver nanoparticles produced with seed-derived callus extract of Catharanthus roseus

Authors

Osibe, D.A., Chiejina, N.V., Ogawa, K., Aoyagi, H.

Journal

Artificial Cells, Nanomedicine and Biotechnology(2018).

Novel polycondensed biopolyamide generated from biomass-derived 4-aminohydrocinnamic acid

Authors

Kawasaki, Y., Aniruddha, N., Minakawa, H., Masuo, S., Kaneko, T., Takaya, N.

Journal

Applied Microbiology and Biotechnology(2018).

Identification of key residues modulating the stereoselectivity of nitrile hydratase toward rac-mandelonitrile by semi-rational engineering

Authors

Cheng, Z., Peplowski, L., Cui, W., Xia, Y., Liu, Z., Zhang, J., Kobayashi, M., Zhou, Z.

Journal

Biotechnology and Bioengineering(2018).

Response of microcystin biosynthesis and its biosynthesis gene cluster transcription in Microcystis aeruginosa on electrochemical oxidation

Authors

Gao, Y., Shimizu, K., Amano, C., Wang, X., Pham, T.L., Sugiura, N., Utsumi, M.

Journal

Environmental Technology (United Kingdom)(2018).

Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate

Authors

Nonaka, L., Yamamoto, T., Maruyama, F., Hirose, Y., Onishi, Y., Kobayashi, T., Suzuki, S., Nomura, N., Masuda, M., Yano, H.

Journal

PLoS ONE(2018).

An improvement of the nonlinear semi-NMF based method by considering bias vectors and regularization for deep neural networks

Authors

Arai, R., Imakura, A., Sakurai, T.

Journal

International Journal of Machine Learning and Computing(2018).

Contour integral method for obtaining the self-energy matrices of electrodes in electron transport calculations

Authors

Iwase, S., Futamura, Y., Imakura, A., Sakurai, T., Tsukamoto, S., Ono, T.

Journal

Physical Review B(2018).

Species composition and distribution of Coleosporium species on the needles of Pinus densiflora at a semi-natural vegetation succession site in central Japan

Authors

Suzuki, H., Hirose, D., Yamaoka, Y.

Journal

Mycoscience(2018).

Salicylic Acid and Jasmonic Acid Pathways are Activated in Spatially Different Domains Around the Infection Site During Effector-Triggered Immunity in Arabidopsis thaliana

Authors

Betsuyaku, S., Katou, S., Takebayashi, Y., Sakakibara, H., Nomura, N., Fukuda, H.

Journal

Plant & cell physiology(2018).

Phylogenetic study of indigenous grapevine leaf rust fungi in North America and biological identity of an invasive grapevine leaf rust fungus in Brazil

Authors

Okane, I., Ono, Y.

Journal

Mycoscience(2018).

Aspergillus fumigatus adhesion factors in dormant conidia revealed through comparative phenotypic and transcriptomic analyses

Authors

Takahashi-Nakaguchi, A., Sakai, K., Takahashi, H., Hagiwara, D., Toyotome, T., Chibana, H., Watanabe, A., Yaguchi, T., Yamaguchi, M., Kamei, K., Gonoi, T.

Journal

Cellular Microbiology(2018).

Modulation of Nitrile Hydratase Regioselectivity towards Dinitriles by Tailoring the Substrate Binding Pocket Residues

Authors

Cheng, Z., Cui, W., Xia, Y., Peplowski, L., Kobayashi, M., Zhou, Z.

Journal

ChemCatChem(2018).

Block SS-CAA: A complex moment-based parallel nonlinear eigensolver using the block communication-avoiding Arnoldi procedure

Authors

Imakura, A., Sakurai, T.

Journal

Parallel Computing(2018).

Spatial heterogeneity of glycogen and its metabolizing enzymes in Aspergillus nidulans hyphal tip cells

Authors

Masuo, S., Komatsuzaki, A., Takeshita, N., Itoh, E., Takaaki, O., Zhou, S., Takaya, N.

Journal

Fungal Genetics and Biology

A NIN-LIKE PROTEIN mediates nitrate-induced control of root nodule symbiosis in Lotus japonicus

Authors

Nishida, H., Tanaka, S., Handa, Y., Ito, M., Sakamoto, Y., Matsunaga, S., Betsuyaku, S., Miura, K., Soyano, T., Kawaguchi, M., Suzaki, T.

Journal

Nature Communications(2018).

Quantitative viral community DNA analysis reveals the dominance of single-stranded DNA viruses in offshore upper bathyal sediment from Tohoku, Japan

Authors

Yoshida, M., Mochizuki, T., Urayama, S.-I., Yoshida-Takashima, Y., Nishi, S., Hirai, M., Nomaki, H., Takaki, Y., Nunoura, T., Takai, K.

Journal

Frontiers in Microbiology(2018).

Infection by Magnaporthe oryzae chrysovirus 1 strain A triggers reduced virulence and pathogenic race conversion of its host fungus, Magnaporthe oryzae

Authors

Aihara, M., Urayama, S.-I., Le, M.T., Katoh, Y., Higashiura, T., Fukuhara, T., Arie, T., Teraoka, T., Komatsu, K., Moriyama, H.

Journal

Journal of General Plant Pathology(2018).

Oscillatory fungal cell growth

Authors

Takeshita, N.

Journal

Fungal Genetics and Biology(2018).

Structure-preserving technique in the block SS-Hankel method for solving hermitian generalized eigenvalue problems

Authors

Imakura, A., Futamura, Y., Sakurai, T.

Journal

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)(2018).

Molecular characterization of a novel mycovirus in Alternaria alternata manifesting two-sided effects: Down-regulation of host growth and up-regulation of host plant pathogenicity

Authors

Okada, R., Ichinose, S., Takeshita, K., Urayama, S.-I., Fukuhara, T., Komatsu, K., Arie, T., Ishihara, A., Egusa, M., Kodama, M., Moriyama, H.

Journal

Virology(2018).

AlgU contributes to the virulence of Pseudomonas syringae pv. tomato DC3000 by regulating production of the phytotoxin coronatine

Authors

Ishiga, T., Ishiga, Y., Betsuyaku, S., Nomura, N.

Journal

Journal of General Plant Pathology(2018).

Growth associated degradation of aliphatic-aromatic copolyesters by Cryptococcus sp. MTCC 5455

Authors

Aarthy, M., Puhazhselvan, P., Aparna, R., George, A.S., Gowthaman, M.K., Ayyadurai, N., Masaki, K., Nakajima-Kambe, T., Kamini, N.R.

Journal

Polymer Degradation and Stability(2018).

Practices of shake-flask culture and advances in monitoring CO2 and O2

Authors

Takahashi, M., Aoyagi, H.

Journal

Applied Microbiology and Biotechnology(2018).

Peroxiredoxin system of Aspergillus nidulans resists inactivation by high concentration of hydrogen peroxide-mediated oxidative stress

Authors

Xia, Y., Yu, H., Zhou, Z., Takaya, N., Zhou, S., Wang, P.

Journal

Journal of Microbiology and Biotechnology(2018).

Hemoglobin catalyzes CoA degradation and thiol addition to flavonoids

Authors

Nagakubo, T., Kumano, T., Hashimoto, Y., Kobayashi, M.

Journal

Scientific Reports(2018).

Adsorption preference for divalent metal ions by Lactobacillus casei JCM1134

Authors

Endo, R., Aoyagi, H.

Journal

Applied Microbiology and Biotechnology(2018).

A small peptide modulates stomatal control via abscisic acid in long-distance signaling

Authors

Takahashi, F., Suzuki, T., Osakabe, Y., Betsuyaku, S., Kondo, Y., Dohmae, N., Fukuda, H., Yamaguchi-Shinozaki, K., Shinozaki, K.

Journal

Nature(2018).

Fertilizer potential of liquid product from hydrothermal treatment of swine manure

Authors

Yuan, T., Cheng, Y., Huang, W., Zhang, Z., Lei, Z., Shimizu, K., Utsumi, M.

Journal

Waste Management(2018).

Structure-activity relationship of clovamide and its related compounds for the inhibition of amyloid β aggregation

Authors

Tsunoda, T., Takase, M., Shigemori, H.

Journal

Bioorganic and Medicinal Chemistry(2018).

Fungal morphogenesis, from the polarized growth of hyphae to complex reproduction and infection structures

Authors

Riquelme, M., Aguirre, J., Bartnicki-Garcia, S., Braus, G.H., Feldbrugge, M., Fleig, U., Hansberg, W., Herrera-Estrell, A., Kamper, J., Kuck, U., Mourino-Perez, R.R., Takeshita, N., Fischer, R.

Journal

Microbiology and Molecular Biology Reviews(2018).

Monitoring of CO2and O2concentrations in the headspace of Sakaguchi flasks during liquid culture of microorganism

Authors

Takahashi, M., Aoyagi, H.

Journal

Applied Microbiology and Biotechnology(2018).

Two-component flavin-dependent riboflavin monooxygenase degrades riboflavin in Devosia riboflavina

Authors

Kanazawa, H., Shigemoto, R., Kawasaki, Y., Oinuma, K.-I., Nakamura, A., Masuo, S., Takaya, N.

Journal

Journal of Bacteriology(2018).

Investigation of virulence factors by “omics” approaches

Authors

Nakaguchi, A.T., Hagiwara, D., Takahashi, H., Sakai, K., Toyotome, T., Watanabe, A., Kamei, K., Gonoi, T.

Journal

Medical Mycology Journal(2018).

Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification

Authors

Fukano, K., Ozawa, K., Kokubu, M., Shimizu, T., Ito, S., Sasaki, Y., Nakamura, A., Yajima, S.

Journal

PLoS ONE(2018).

Improving the Thermostability and Catalytic Efficiency of the Subunit-Fused Nitrile Hydratase by Semi-Rational Engineering

Authors

Xia, Y., Cui, W., Cheng, Z., Peplowski, L., Liu, Z., Kobayashi, M., Zhou, Z.

Journal

ChemCatChem(2018).

Heterologous and High Production of Ergothioneine in Escherichia coli

Authors

Osawa, R., Kamide, T., Satoh, Y., Kawano, Y., Ohtsu, I., Dairi, T.

Journal

Journal of Agricultural and Food Chemistry(2018).

Superresolution and pulse-chase imaging reveal the role of vesicle transport in polar growth of fungal cells

Authors

Zhou, L., Evangelinos, M., Wernet, V., Eckert, A.F., Ishitsuka, Y., Fischer, R., Nienhaus, G.U., Takeshita, N.

Journal

Science Advances(2018).

Nitric Oxide, an Old Molecule With Noble Functions in Pseudomonas aeruginosa Biology

Authors

Toyofuku, M., Yoon, S.-S.

Journal

Advances in Microbial Physiology(2018).

An overview of the accumulation of microcystins in aquatic ecosystems

Authors

Pham, T.-L., Utsumi, M.

Journal

Journal of Environmental Management(2018).

Potential use of methane fermentation digested slurry as a low-cost, environmentally-friendly nutrient for bioethanol production from crude glycerol by Klebsiella variicola TB-83D

Authors

Seta, K., Suzuki, T., Kiyoshi, K., Shigeno, T., Nakajima-Kambe, T.

Journal

New Biotechnology(2018).

Effect of intermittent opening of breathable culture plugs and aeration of headspace on the structure of microbial communities in shake-flask culture

Authors

Takahashi, M., Aoyagi, H.

Journal

Journal of Bioscience and Bioengineering(2018).

Spectral clustering with adaptive similarity measure in Kernel space

Authors

Ye, X., Sakurai, T.

Journal

Intelligent Data Analysis(2018).

Optimization of reordering procedures in HOTRG for distributed parallel computing

Authors

Yamada, H., Imakura, A., Imamura, T., Sakurai, T.

Journal

Proceedings - 2018 IEEE 32nd International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2018(2018).

Extracytoplasmic diaphorase activity of Streptomyces coelicolor A3(2)

Authors

Oinuma, K.-I., Yamaguchi, I., Shindo, D., Fujimoto, M., Nishiyama, T., Takano, H., Takaya, N., Ueda, K.

Journal

Biochemical and Biophysical Research Communications(2018).

Involvement of S-type anion channels in disease resistance against an oomycete pathogen in Arabidopsis seedlings

Authors

Kurusu, T., Mitsuka, D., Yagi, C., Kitahata, N., Tsutsui, T., Ueda, T., Yamamoto, Y., Negi, J., Iba, K., Betsuyaku, S., Kuchitsu, K.

Journal

Communicative and Integrative Biology(2018).

Novel antioxidant isolated from warcupiella spinulosa jcm 2358, 7-hydroxycordylactam

Authors

Shigemoto, R., Oinuma, K.-I., Masuo, S., Takaya, N.

Journal

Heterocycles(2018).

Paracoccus denitrificans can utilize various long-chain N-acyl homoserine lactones and sequester them in membrane vesicles

Authors

Morinaga, K., Yamamoto, T., Nomura, N., Toyofuku, M.

Journal

Environmental Microbiology Reports(2018).

Current understanding of sulfur assimilation metabolism to biosynthesize l-cysteine and recent progress of its fermentative overproduction in microorganisms

Authors

Kawano, Y., Suzuki, K., Ohtsu, I.

Journal

Applied Microbiology and Biotechnology(2018).

Response of algal-bacterial granular system to low carbon wastewater: Focus on granular stability, nutrients removal and accumulation

Authors

Zhao, Z., Yang, X., Cai, W., Lei, Z., Shimizu, K., Zhang, Z., Utsumi, M., Lee, D.-J.

Journal

Bioresource Technology(2018).

Emerging Antifungal Drug Resistance in Aspergillus fumigatus and Among Other Species of Aspergillus

Authors

Toyotome, T., Hagiwara, D., Takahashi, H., Watanabe, A., Kamei, K.

Journal

Current Fungal Infection Reports(2018).

Soybean leaves transcriptomic data dissects the phenylpropanoid pathway genes as a defence response against Phakopsora pachyrhizi

Authors

Hossain, M.Z., Ishiga, Y., Yamanaka, N., Ogiso-Tanaka, E., Yamaoka, Y.

Journal

Plant Physiology and Biochemistry(2018).

Unveiling the RNA virosphere associated with marine microorganisms

Authors

Urayama, S.-I., Takaki, Y., Nishi, S., Yoshida-Takashima, Y., Deguchi, S., Takai, K., Nunoura, T.

Journal

Molecular Ecology Resources(2018).

Fermentation and purification of microbial monomer 4-amminocinnamic acid to produce ultra-high performance bioplastics

Authors

Minakawa, H., Masuo, S., Kaneko, T., Takaya, N.

Journal

Process Biochemistry(2018).

Chrysoviruses in magnaporthe oryzae

Authors

Moriyama, H., Urayama, S.-I., Higashiura, T., Le, T.M., Komatsu, K.

Journal

Viruses(2018).

Unsupervised feature selection for microarray gene expression data based on discriminative structure learning

Authors

Ye, X., Sakurai, T.

Journal

Journal of Universal Computer Science(2018).

Biochemical characterization of CYP505D6, a self-sufficient cytochrome P450 from the white-rot fungus Phanerochaete chrysosporium

Authors

Sakai, K., Matsuzaki, F., Wise, L., Sakai, Y., Jindou, S., Ichinose, H., Takaya, N., Kato, M., Wariishi, H., Shimizu, M.

Journal

Applied and Environmental Microbiology(2018).

Identification of Two Mannosyltransferases Contributing to Biosynthesis of the Fungal-type Galactomannan α-Core-Mannan Structure in Aspergillus fumigatus

Authors

Onoue, T., Tanaka, Y., Hagiwara, D., Ekino, K., Watanabe, A., Ohta, K., Kamei, K., Shibata, N., Goto, M., Oka, T.

Journal

Scientific Reports(2018).

A Foraging Mandala for Aquatic Microorganisms

Authors

Fernandez, V.I., Yawata, Y., Stocker, R.

Journal

ISME Journal(2018).

5-Methylmellein is a novel inhibitor of fungal sirtuin and modulates fungal secondary metabolite production

Authors

Shigemoto, R., Matsumoto, T., Masuo, S., Takaya, N.

Journal

The Journal of general and applied microbiology(2018).

A simple method to detect the tandem repeat of the cyp51A promoter in azole-resistant strains of Aspergillus fumigatus

Authors

Toyotome, T., Hagiwara, D., Watanabe, A., Kamei, K.

Journal

Medical mycology(2018).

The effects of lepidopteran oral secretion on plant wounds: A case study on the interaction between spodoptera litura and arabidopsis Thaliana

Authors

Kinoshita, N., Betsuyaku, S.

Journal

Plant Biotechnology(2018).

Spectral feature scaling method for supervised dimensionality reduction

Authors

Matsuda, M., Morikuni, K., Sakurai, T.

Journal

IJCAI International Joint Conference on Artificial Intelligence(2018).

Sydowianumols A, B, and C, three new compounds from discomycete poculum pseudosydowianum

Authors

Kawashima, D., Hosoya, T., Tomoda, H., Kita, M., Shigemori, H.

Journal

Chemical and Pharmaceutical Bulletin(2018).

Biological quorum sensing molecule-metal complex produces π-conjugated polymer

Authors

Yamabe, K., Nomura, N., Goto, H.

Journal

International Journal of Polymeric Materials and Polymeric Biomaterials(2018).

Erratum: Salicylic Acid and Jasmonic Acid Pathways are Activated in Spatially Different Domains Around the Infection Site During Effector-Triggered Immunity in Arabidopsis thaliana (Plant & cell physiology)

Authors

Betsuyaku, S., Katou, S., Takebayashi, Y., Sakakibara, H., Nomura, N., Fukuda, H.

Journal

Plant & cell physiology(2018).

Simultaneous band reduction of two symmetric matrices

Authors

Du, L., Imakura, A., Sakurai, T.

Journal

Computers and Mathematics with Applications(2018).

Protein kinase a and high-osmolarity glycerol response pathways cooperatively control cell wall carbohydrate mobilization in aspergillus fumigatus

Authors

de Assis, L.J., Manfiolli, A., Mattos, E., Fabri, J.H.T.M., Malavazi, I., Jacobsen, I.D., Brock, M., Cramer, R.A., Thammahong, A., Hagiwara, D., Ries, L.N.A., Goldman, G.H.

Journal

mBio(2018).

Spatial Distribution and Chemical Tolerance of Streptococcus mutans within Dual-Species Cariogenic Biofilms

Authors

Nakanishi, Y., Yamamoto, T., Obana, N., Toyofuku, M., Nomura, N., Kaneko, A.

Journal

Microbes and environments(2018).

Complete Genome Sequence of a Novel RNA Virus Identified from a Deep-Sea Animal, Osedax japonicus

Authors

Urayama, S.-I., Takaki, Y., Nunoura, T., Miyamoto, N.

Journal

Microbes and environments(2018).

Nitric Oxide Production from Nitrite Reduction and Hydroxylamine Oxidation by Copper-containing Dissimilatory Nitrite Reductase (NirK) from the Aerobic Ammonia-oxidizing Archaeon, Nitrososphaera viennensis

Authors

Kobayashi, S., Hira, D., Yoshida, K., Toyofuku, M., Shida, Y., Ogasawara, W., Yamaguchi, T., Araki, N., Oshiki, M.

Journal

Microbes and environments(2018).

Metallochaperone function of the self-subunit swapping chaperone involved in the maturation of subunit-fused cobalt-type nitrile hydratase

Authors

Xia, Y., Peplowski, L., Cheng, Z., Wang, T., Liu, Z., Cui, W., Kobayashi, M., Zhou, Z.

Journal

Biotechnology and Bioengineering(2018).